Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31260 944 / 0 ATAPG9, APG9 autophagy 9 (APG9) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033881 [exp] 1477 / 0 AT2G31260 1021 / 0.0 autophagy 9 (APG9) (.1) Lus10024880 [exp] 936 / 0 AT2G31260 900 / 0.0 autophagy 9 (APG9) (.1) Lus10000709 [exp] 536 / 0 AT2G31260 477 / 2e-160 autophagy 9 (APG9) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G039900 [exp] 1111 / 0 AT2G31260 1021 / 0.0 autophagy 9 (APG9) (.1) Potri.005G222800 [exp] 1088 / 0 AT2G31260 952 / 0.0 autophagy 9 (APG9) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04109 [flax] [poplar] APG9 Autophagy protein Apg9
Representative CDS sequence Show only first row Show all	>Lus10003567 pacid=23155666 polypeptide=Lus10003567 locus=Lus10003567.g ID=Lus10003567.BGIv1.0 annot-version=v1.0 ATGTTCGGTGGGCAGACAAGCTCTAACACCCTCAGGAAATTTAATTGGAGATGGCACGATGACTCTACTTCAACAACAGGCTTGCTTAAGGATGTGGCAC CAGAAATTGAATTGTCTGGTTATGGAAGGATACCAAGTCCCGGTAGTGAAAGCCCTTCTGGGCTTCTTAATGGTGAAAGCTTGAACGTTCAGCCAATAGC TGATCTGGACTTGTTCTTTGAAAGGGTTTACAGTTACTACTGTGAGAAAGGGCTTTGGTGCATTATTTTAAAATGGGTAGTTGAGCTTTTGAGCCTTGGT TTCACCATCTGTTTCTCTGGGTTTTTCTTACTCTACGTTGACTGGAATGGTCTACGTAATGCTAAGTGTGGGATGGATGCAGTTGAATCTGGAACCAAGC CTTGTGATCTTGCAAAAGAAGCTCTTCACGAGCACCCACTGACCCCTTTAACTCTATCAAAAGCCATCATTGTTGGATATTTGGGGTTCTTCTCTCAACT GAAGGAGACTCTCCAGATCCGTCAATTCTATCATCACAGTCTTCATGTAACAGACAAGGAGATTCAAACTATACCATGGGCAACTGTCCTTGAAAAGGTT GTTCAACTGCAAAGCTCACAGCAACTCTGCGTGGTGAAAGACCTATCAGCTCATGATATCATCATGCGACTGATGCGGAAAGAAAACTACTTGATTGGAA TGCTCAACAAAGGGATTCTTGCATTCCCTATATCACCATGGGTTCCAGGTGCTGGACCAACAGTCAAATCTGGCTCATATGGAACCCAACGTCGCTTGAT TCTAACAAAGACTCTTGAATGGACCTTAAATTGGTGCATACTGCAGAGCATGTTTGATAGAAACTTTTGTGTTAAGATGGACTTCGTTGCTAATCCTAAA GCACTGAGAAAAAGACTCATGGTTGTTGGGATCGCAATGCTTGTACTTTCGCCATTTCTAGTTATTTTCATGTTAGTGTATCTCTTCCTACGACATGCTG AACAGTTCTACAACCATCCCAGCACAGCATCATCTCGACGGTGGTCAAATTTGTCTCGGTGGATTTTCAGAGAATTCAATGAGGTTGACCATTTGTTCAA GCATCGAATCAACAGCAGTATAGTGCATGCTTCAGATTATCTTAAACAGTTCCCATCACCTATAATTTCAATCATTGCAAAGTTTATCTCTTTCATTTCT GGTGGATTTGCTGCTGTCCTGCTGATCATTGCATTTGTGGAGGAATCCTTACTAGAGGGCCATATCTTCGGACGCAACTTGTTTTGGTATGCTGCTGTAT TTGGAACTATAACAGCTATCAGCCGGGCAGCAGTGACGGATGATCTTCTCGTTCTCGATCCAGAAGGAGCAATGTCAGGGGTGGTACAGCAAACACACTA TATGCCAAAGAGGTGGCGAAGCAACGAGCATACTGAAAGTGTTAGAATAGAGTTCGAGACCTTATTTCAGTATACTGGTATGATGTTAATTGAGGAGATG GCATCTATATTCCTCACACCACTCTTGCTTTTATTTGTTGTACCGAAGCGAGTTGATGACATCTTGGAATTCATAGCAGATTTCACAGTGGATGTGGAAG GTGTTGGCCACGTTTGTAGTTTGAGTGCCTTCGAATTTCTAAAGCATGGCAATAGCAATTATGGTTCGCCCTGTAATGTAGCTCGCACTCAAAGGAGCTC TCAGGGGAAGATGGAAAAATCAATGTTGAGTTTCAAGAGTAGCTATCCTTCGTGGGAACCAAATGCTCAAGGGAAGCAGTTCCTTCTAAATCTTCGAAAT TTCAGGGAGCAGAAGCTGCAAGGACCTGAAATTAGACATACTATGTATCACCACCAACACCTAATGTTGCGTGGAAGCCCCCTAAGCCTGAGAAGTGCTG GAGAGAGAAACACAAACTTCTCAAGGGGCACGCCATATAATACTCCTGGATTTCAGTTCGACTCCTTATGGTTGATCGACGTGGATCAAAAGAATCACCA TCCGTATCTTTTGGACTGGTACTATACTTCCCGACCCCGGGATGATACAAGGAGAGAAGAACACATTGTACAACTTGAAGTGGATGAGCACCAAACCGAA GACTTTTGGAACCCGTCCAATTTGGCACGGGGCGATGCAAGGCACGATGATGATGACTACTGGGGCGGTCAGCATTTAAGCGACGATCGACCCGACTCCC ATATGCAGGCTTCAACGTCTGCTCCATTCTTCCGGGAGAGTGTGATCCGCCATCAAGATTCGACCCAAGTCGATGTCCATCCTAGTGGAAGCCATTGGTG GTCGAGAAGCAACTTGCGTGGACCGCAGCCCCAAGCAAGTTTCCTCGAGCCACCGGATTTCAACAACCGATACACTCCTGCAGGTAATTACGTGGATGAG AACATATCAGAAAGAAGCCTCGAGGAGGAACAAGAATATGATCTTGATCGAAGGAACTCCCGTAGTCTGTTGAGGACTGGTTACATGTACGATGATGACA CGGAAGGTGGAGGGAACTTGAGTCTCCATTTCGACGACGTATATGGCAGCAGACGTGAAACTAGAACGATAAATGAAGATGATGAAGAAGACCCACCTAG TAGTTTCTGA
AA sequence Show only first row Show all	>Lus10003567 pacid=23155666 polypeptide=Lus10003567 locus=Lus10003567.g ID=Lus10003567.BGIv1.0 annot-version=v1.0 MFGGQTSSNTLRKFNWRWHDDSTSTTGLLKDVAPEIELSGYGRIPSPGSESPSGLLNGESLNVQPIADLDLFFERVYSYYCEKGLWCIILKWVVELLSLG FTICFSGFFLLYVDWNGLRNAKCGMDAVESGTKPCDLAKEALHEHPLTPLTLSKAIIVGYLGFFSQLKETLQIRQFYHHSLHVTDKEIQTIPWATVLEKV VQLQSSQQLCVVKDLSAHDIIMRLMRKENYLIGMLNKGILAFPISPWVPGAGPTVKSGSYGTQRRLILTKTLEWTLNWCILQSMFDRNFCVKMDFVANPK ALRKRLMVVGIAMLVLSPFLVIFMLVYLFLRHAEQFYNHPSTASSRRWSNLSRWIFREFNEVDHLFKHRINSSIVHASDYLKQFPSPIISIIAKFISFIS GGFAAVLLIIAFVEESLLEGHIFGRNLFWYAAVFGTITAISRAAVTDDLLVLDPEGAMSGVVQQTHYMPKRWRSNEHTESVRIEFETLFQYTGMMLIEEM ASIFLTPLLLLFVVPKRVDDILEFIADFTVDVEGVGHVCSLSAFEFLKHGNSNYGSPCNVARTQRSSQGKMEKSMLSFKSSYPSWEPNAQGKQFLLNLRN FREQKLQGPEIRHTMYHHQHLMLRGSPLSLRSAGERNTNFSRGTPYNTPGFQFDSLWLIDVDQKNHHPYLLDWYYTSRPRDDTRREEHIVQLEVDEHQTE DFWNPSNLARGDARHDDDDYWGGQHLSDDRPDSHMQASTSAPFFRESVIRHQDSTQVDVHPSGSHWWSRSNLRGPQPQASFLEPPDFNNRYTPAGNYVDE NISERSLEEEQEYDLDRRNSRSLLRTGYMYDDDTEGGGNLSLHFDDVYGSRRETRTINEDDEEDPPSSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Lus10003567 [exp]	0	1
AT5G54730		ATATG18F	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10035835 [exp]	1.4	0.9665
AT2G39340		AtSAC3A	yeast Sac3 homolog A, SAC3/GAN...		Lus10001973 [exp]	1.7	0.9525
AT2G31130			unknown protein		Lus10017672 [exp]	2.2	0.9437
AT1G22620		ATSAC1	suppressor of actin 1, Phospho...		Lus10014827 [exp]	2.4	0.9557
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Lus10032200 [exp]	2.6	0.9366
AT4G00060		MEE44	maternal effect embryo arrest ...		Lus10015886 [exp]	4.2	0.9315
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10008285 [exp]	4.2	0.9397
AT1G36990			unknown protein		Lus10028037 [exp]	4.4	0.9220
AT3G20250		APUM5	pumilio 5 (.1)		Lus10033353 [exp]	6.0	0.9446
AT3G11440	MYB	AtMYB65	myb domain protein 65 (.1)		Lus10026142 [exp]	6.9	0.9348

Compare expression of checked genes

Lus10003567 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.