Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33320 222 / 9e-67 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G04540 220 / 4e-66 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G13350 203 / 2e-61 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G04360 195 / 9e-59 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT4G01200 129 / 4e-35 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G16510 71 / 3e-13 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT5G23950 67 / 1e-12 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT4G15755 54 / 4e-08 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G40815 52 / 2e-07 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G45760 50 / 6e-07 BAL, BAP2 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032780 [exp] 656 / 0 AT2G33320 227 / 1e-70 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10014466 [exp] 196 / 3e-59 AT1G04540 245 / 7e-76 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10008731 [exp] 117 / 2e-30 AT4G01200 222 / 3e-72 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10002155 [exp] 117 / 4e-30 AT4G01200 224 / 7e-73 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10024505 [exp] 59 / 4e-10 AT2G45760 58 / 3e-10 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) Lus10006523 [exp] 59 / 1e-09 AT3G16510 147 / 1e-41 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10040692 [exp] 59 / 2e-09 AT1G07310 189 / 2e-57 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10004500 [exp] 58 / 2e-09 AT1G09070 179 / 2e-55 soybean gene regulated by cold-2 (.1) Lus10029901 [exp] 58 / 3e-09 AT1G09070 172 / 6e-52 soybean gene regulated by cold-2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G021300 [exp] 444 / 1e-156 AT3G04360 213 / 2e-65 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.013G048400 [exp] 395 / 6e-137 AT2G33320 211 / 6e-63 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.010G065300 [exp] 231 / 7e-72 AT2G13350 261 / 6e-83 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.008G172300 [exp] 230 / 5e-71 AT2G33320 265 / 8e-82 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.002G166400 [exp] 136 / 1e-37 AT4G01200 211 / 4e-68 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.010G024200 [exp] 83 / 1e-17 AT3G16510 135 / 5e-37 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.001G458101 [exp] 72 / 2e-15 AT2G13350 74 / 1e-16 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.008G064900 [exp] 70 / 4e-13 AT1G07310 150 / 1e-42 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.012G144600 [exp] 64 / 3e-11 AT5G23950 166 / 2e-50 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.008G209800 [exp] 63 / 7e-11 AT3G16510 137 / 8e-38 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Lus10003570 pacid=23165481 polypeptide=Lus10003570 locus=Lus10003570.g ID=Lus10003570.BGIv1.0 annot-version=v1.0 ATGACGTACAACACTCACCCCTTCCAGCTCCTGGAGATCAACGTCATCTCCGCTCAGGACCTCGCTCCCGTTTCCAAATCCATGAAGACCTACGCCGTCG TCTGGGTCCACCCCGAGCGCAAATTGAGCACCAAAGTCGACCAGGGAGGCAACACCAATCCTCAGTGGAATGAAAAATTCGTCTTCCGAGTCGACGATAC CTTTCTGAATTCCGAAAGCTCCTCCGTCATGATCGAGATCTACGCCGCTGCTTGGCTGCGCGATGTTCAGATCGGATCTGTGCGTGTGCTAATAAGCAAC CTATTCCCTTCCGGATCCAGTGGAAACAACAACCACGGCGCTGCCAAGATGCGATTCGTCGCGCTCCAGATCCGCCGTCCTTCCGGCCGGCCTCAGGGGA TTTTGAACATGGGAGTACAGCTGCTCGACAACACGATGAGATCCATGCCTTTGTACACGGAGCTCTCCGCTTCCGGAATCGGATTTAACGACCTCCTCGA AGCTACCGCCGCTGCTGCGGGGAAGAATCTAGAGGAGAAGACAGCCAAGCTCCGCCGTTCGAAGAGCGATCACACGGATCTGACCTCTATGAATAATGAC AAGGCTTCTTCTACCAGGAGATACGCCGGGAGTTCGATCGGAATCGGCGGTGGAGGTGGCGGAGGATCGCTCGTTAGCTCCTCTATAGTCCCCGCCAAGA AACAGAATGTCAGATCGAGGGAACACGAGGATGCTGGGGGTAACGGGAGCATGGTGAACGGTGGGAGTATCGCGAAGGGGCTGATTAAGACGCCAGGAGG AGGGAACCACGGGGATGCTGGGAGCTCGGTGCTGGAGGATTGGACCGAAAACGACAGCGTTGAAGGGCTGAGGACGAAGCTGGAGAGGTGGAGGACCGAA TTGCCGCCGATCTATGACACCGACGTGAAGAAGATGCAGTCCAGGAGCAGGAGGAAAGGGAACAACAACCACCAGCGGAGGAAATCGGAAGGGACGAGGC TGTTCTCCTGCTTCGGTAACGCCTGCGGTTGCGAGATCACTATCACCTGCGGCGGAGGAGGGAAGAAGAAGGACGCCAACGGGAATAAGCACGGCGACCG TCGCGGCAGCTCCGCCGACAGCGAGTCCTACTTCTAA
AA sequence Show only first row Show all	>Lus10003570 pacid=23165481 polypeptide=Lus10003570 locus=Lus10003570.g ID=Lus10003570.BGIv1.0 annot-version=v1.0 MTYNTHPFQLLEINVISAQDLAPVSKSMKTYAVVWVHPERKLSTKVDQGGNTNPQWNEKFVFRVDDTFLNSESSSVMIEIYAAAWLRDVQIGSVRVLISN LFPSGSSGNNNHGAAKMRFVALQIRRPSGRPQGILNMGVQLLDNTMRSMPLYTELSASGIGFNDLLEATAAAAGKNLEEKTAKLRRSKSDHTDLTSMNND KASSTRRYAGSSIGIGGGGGGGSLVSSSIVPAKKQNVRSREHEDAGGNGSMVNGGSIAKGLIKTPGGGNHGDAGSSVLEDWTENDSVEGLRTKLERWRTE LPPIYDTDVKKMQSRSRRKGNNNHQRRKSEGTRLFSCFGNACGCEITITCGGGGKKKDANGNKHGDRRGSSADSESYF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33320			Calcium-dependent lipid-bindin...		Lus10003570 [exp]	0	1
					Lus10007539 [exp]	2.6	0.6780
AT4G03220			Protein with RNI-like/FBD-like...		Lus10018509 [exp]	13.9	0.6067
AT3G61650		TUBG1	gamma-tubulin (.1)		Lus10010985 [exp]	21.8	0.6546
AT4G25780			CAP (Cysteine-rich secretory p...		Lus10006981 [exp]	34.2	0.6390
AT5G05610	Alfin	AL1	alfin-like 1 (.1.2)		Lus10014843 [exp]	37.7	0.6510
AT3G07120			RING/U-box superfamily protein...		Lus10038180 [exp]	43.8	0.5747
AT1G72020			unknown protein		Lus10009443 [exp]	57.4	0.5955
AT2G41945			unknown protein		Lus10029305 [exp]	60.7	0.6218
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10014885 [exp]	64.1	0.5965
AT4G11610		NTRB, ATNTRB	C2 calcium/lipid-binding plant...		Lus10000605 [exp]	65.7	0.6081

Compare expression of checked genes

Lus10003570 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.