Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08600 1462 / 0 ATRX, CHR20 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4) AT3G19210 248 / 7e-68 ATRAD54, CHR25 homolog of RAD54 (.1.2) AT2G18760 201 / 6e-52 CHR8 chromatin remodeling 8 (.1) AT1G05490 183 / 3e-46 CHR31 chromatin remodeling 31 (.1) AT5G63950 178 / 4e-45 CHR24 chromatin remodeling 24 (.1) AT2G21450 169 / 2e-42 CHR34 chromatin remodeling 34 (.1) AT2G13370 166 / 6e-41 CHR5 chromatin remodeling 5 (.1) AT2G16390 160 / 1e-39 DMS1, CHR35, DRD1 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) AT5G44800 155 / 1e-37 PKR1, CHR4, MI-2-LIKE PICKLE RELATED 1, chromatin remodeling 4 (.1) AT5G66750 146 / 2e-35 CHR01, CHA1, SOM1, CHR1, SOM4, DDM1, ATDDM1 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032785 [exp] 2667 / 0 AT1G08600 1252 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4) Lus10014047 [exp] 230 / 1e-61 AT3G19210 1256 / 0.0 homolog of RAD54 (.1.2) Lus10019866 [exp] 228 / 7e-61 AT3G19210 1257 / 0.0 homolog of RAD54 (.1.2) Lus10033669 [exp] 195 / 9e-51 AT1G03750 1148 / 0.0 CHROMATIN REMODELING 9, switch 2 (.1) Lus10015690 [exp] 194 / 6e-50 AT5G63950 1133 / 0.0 chromatin remodeling 24 (.1) Lus10037696 [exp] 194 / 1e-49 AT5G63950 1121 / 0.0 chromatin remodeling 24 (.1) Lus10003543 [exp] 179 / 6e-45 AT2G18760 1543 / 0.0 chromatin remodeling 8 (.1) Lus10033909 [exp] 165 / 1e-40 AT2G18760 1569 / 0.0 chromatin remodeling 8 (.1) Lus10022423 [exp] 157 / 3e-38 AT2G13370 2250 / 0.0 chromatin remodeling 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G048500 [exp] 1783 / 0 AT1G08600 1603 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4) Potri.019G021500 [exp] 1781 / 0 AT1G08600 1612 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4) Potri.004G141500 [exp] 239 / 8e-65 AT3G19210 1259 / 0.0 homolog of RAD54 (.1.2) Potri.017G012400 [exp] 195 / 1e-50 AT1G03750 1162 / 0.0 CHROMATIN REMODELING 9, switch 2 (.1) Potri.005G066600 [exp] 190 / 1e-48 AT2G18760 353 / 7e-104 chromatin remodeling 8 (.1) Potri.007G102800 [exp] 189 / 2e-48 AT5G63950 1103 / 0.0 chromatin remodeling 24 (.1) Potri.005G226500 [exp] 175 / 4e-44 AT2G18760 1362 / 0.0 chromatin remodeling 8 (.1) Potri.006G262200 [exp] 172 / 9e-43 AT2G25170 1826 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Potri.018G021100 [exp] 168 / 1e-41 AT2G25170 1818 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Potri.009G047800 [exp] 168 / 1e-41 AT2G13370 2129 / 0.0 chromatin remodeling 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00176 [flax] [poplar] SNF2_N SNF2 family N-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10003572 pacid=23165465 polypeptide=Lus10003572 locus=Lus10003572.g ID=Lus10003572.BGIv1.0 annot-version=v1.0 ATGGAAGAAAAGCATGAGGACTATGAAGAAGTTGAAGTGGCTTCCAATGGCTCTTCTATTGGTGATTCAGATGAGGATGAACCGTCGACATCTGGACAAG ATGATGATACACATCTTGAGGCAAGCTGCTCTAGATACTTTTTAAGCAGTTCACTGGTGAGAGTGAACAACTACTCAATTGATGATCATTTGCTAATTCT GCAGTCAATGGAACCTCTGACTGAGGAAGAAATCCAAGAGCTGATATCTGAGTTCTTGGAAGTTGAGAGTAAGGCTGCAGAGGCTCAAGAAGCACTTGAA AAGGAGTCTCTTACAAAAGTAGAGACTGAAGTAAGAGAGGAATTGGCACAAACTCTTCAGGGGGATGAGCTAGAGGCTGCTGTGCAAGATGAGATTACTA CTTTAAAGGAAGAATGGGAGGCTGTTCTTGATGAACTTGAAACCGAGAGTGCTCATTTGTTGGAACAACTTGATGGGGCTGGTATTGAGCTACCAAGCAT TTACAAGTTAATAGAAAGTCAAGCTCCTGATGTATGCTGCACAGAAGCATGGAAGAAAAGAACTCATTGGGTTGGATCCCAGGTAACCACTGAAGTCAAG TCAACTGTAGCTGATGCTGAGAAGTTCCTTCAGGACGTGAGGCCTGTCAGAAGACGTCATGGTAAACTCTTGGAGGAAGGCGCTAGTGGGTTTATTCAGA AAAAGGTGGGTAGCGTTGATGGAAAAATGGACTATATTGCTGAAAATAGAGATAAAGACTGGGATTCTATCAACAAACTATTTTCTGGTGATATACGCGA TGGTGTTTCGTCATTTGGCAGCGAGCATTGGGCTTCTGTTTATCTGGCAAACACGCCTAAGGAAGCTTCAATGATGGGTCTTAAATTTCCTGGTGTTGAT GAGGTTGAAGAGATAAACGACATTGATGATAATTCCACTAATCCATTTGTAGCACTTGCCATAGAGCATGAAAATGAGTTGCCACTATCTGAAGAACAAA TGAAGAATTATAAGAAGGTGAAAGAGGATGATGATGCAAAGATGGAAGTTCAGAAACTGCAACATCATTTGAAGAAGAGGAGACGTCGTAAGAAACAAAA GCAGAGTCGGGATACAATTATGGATGATTCACTGCCTACGGATGATTCTTCCGTCGTAAAATATCAGGAACATGGAGAGGGTGTTTCAGGCAATCCCCTT GTTACATCATGCGAAATTCTGGGGACAGAAACTCTTGAAGACGGACATTTTGACAGGGAGCAACCTACAACTGATGGAATGTCAGATTCCTGTGCATTAA CCTTTAATGCCACTAGAATCATTGGTGCTAAGCGTCCATATGAGCATGACAATCTAAACGTTAGTGATAAGAAAAGCCGGACTGTTGATGTTGATAGTGA TGATGTGAATAACATGAAGGATAATTTGGCTGGTGATGCCATTAAAGTAGAGCATCAAGCAGTTGTACAAGAACTGGATCAGGAGTATCGTTGCACTGCT TGTAATAAGATCACTCCTGAAATACACTCGCATCCTCTTCTGGGAGTGATTGTTTGCAAGGAGTGCAAGTGCATGGTAGAAGAGAAATTGCTATTGAAGG ATCCAGAGTTTTATTGTGGGTGGTGTGCACAAAGTGAGGACTTAGTGAGCTGCAACTCCTGCAAAAATTTATTCTGTAGAACTTGTATCACAAAAAATAT TGGTCAAGAAGGCTGTCCAGACTCTCTAGCTTGTGGCTGGCAGTGTTGTTGTTGCCTTCCGAATTTGCTAGATAGACTAACTAGCGAATTGGAGAAAGCC GTGGAATCTGTGCATTCAATGGATGCAAGCTCTGACAGTGATTCAGAAAACTCTGGATCAAATATAAATGCTGCAATAAGTTCTAAGAGAAGGAGGAAAA AGAAGATTCGAAGGATCTTGGATGATGCAGAACTTGGAGAGGAGACAAAGAGGAAGATTGCAATTGAAAAGGAGCGCCAAGAGCATTTGAAATCTCTAAA AGTGCAATTCTCTGGCAAGTCCGAGATGACTAGGCCCGCAACCTTGCATGGAAATTTACCTGAAGGTGCTACTGCAGAAGTACTTGGTGATCCCATAACC GGATATGTGGTAAATGTTGTTAGGGACAAAGGTGAAGAAGCTGTTAGGATTCCTCCTAGCATTTCGGCCAAATTGAAAGCACATCAGGTTGCAGGAATAA GGTTTATGTGGGAAAATATTATACAATCAATTGGACGAGTAAAGTCTGGAGACAAGGGCCTTGGTTGTATTTTGGCTCATACAATGGGCCTTGGTAAGAC TTTCCAGGTCATAGCTTTCCTGTACACTGCTATGAGGAGTGTTGATTTGGGCTTAAAAACTGCCCTTATTGTTACGCCTGTCAATGTGCTCTATAACTGG CGTCATGAGTTCATGAAGTGGAAGCCTTCTGAAGTTAAACCCATCCGCGTTTTCATGATGGAAGATGTATCAAGGGAAAGGAGAGGAGAATTGCTTGCAA AATGGAGAGCTAAGGGTGGTGTTTTCTTGATTGGCTACACTGCTTTCCGAAACTTATCCTTTGGAAGGCATGTCAAGGATCGAAATACTGCTAGAGAAAT TAGCTGTGCCTTGCAGGACAGCAGCCCTGTATCTTCATATGGATCTAAGCATTATTATTTTCATCATCAGGAGGGACCTGATATACTTGTTTGCGATGAA GCTCACATGATTAAGAATGCTAAAGCTGATACAACCCAAGCATTGAAACTTGTCAAATGCCAGAGAAGGATTGCACTAACTGGATCGCCTCTTCAAAACA ATCTAATGGAGTATTATTGTAAGGTTTTCTTGGCAGCAGCCATGAGTTCCGAAATCGGCAACTTCCAAAATCCTATAGAGAATGGACAGCATACCAACTC AACCTCTGATGACGTTAAAATCATGAACCAAAGGTCACATATCCTCTATGAAGAACTAAAAGGATTTGTCCAAAGAATGGACATGGACGTGGTGAAAAAA GATCTGCCGCCTAAAACTGTCTTTGTAATAACTGTAAAGCTGTCACAACTTCAGAGGAAGTTATATAAAAAGTTCCTTGAGGTTCATGGTTTCGCAAGCG ATAGCATCTACAACGAAAGGTCAAAGAGGAGCTTTTTTGCCGGATACCAGGCTTTGGCTCAGATATGGAATCATCCCGGGATTTTGCAATTGAGGAAAGA TAAAGATCATGTCAGCCATGAGGAAATTATTGAGAACGATGAAAACTCAAGTGATGAGAATGTGGATCATAATAACATTCTTGGAGAAAAACCAAAAAAT GCCAATAGTAATCTGCAAGGAAAAAGTGATTATGGATTCCTCGTGAAGGGTTGGTGGAATGAACTTCTGCGGGAAGATGATTATAAAGACCCAAACTACA GCGGGAAAATGGTTCTGCTGCTTGAAATTCTAACCATGTGTTCCAGTGTGGGGGACAAGGCATTGGTTTTTAGTCAGAGCATACCAACATTGGATCTGAT AGAATTCCATCTATCAAGACTTCCTCGTCGTGGAAAGCCCGGAAAGTTTTGGAGAAAAGAGAAAGACTGGTACAGGCTAGACGGGAGAACAGAGAGCTCT GAAAGGCAGAAGTTGGTAGAAAGGTTTAATGACCCAGAAAATAAGAGGGTCAAATGCACCCTGATATCTACAAGAGCTGGATCTCTCGGGATAAATCTAC ATTCTGCTAACCGAGTCATCATCGTTGATGGTTCTTGGAATCCTACCTATGATCTTCAAGCCATTTATCGGGCATGGAGGTATGGCCAGAAAAAACCGGT ATTTGCTTACAGGATGATGGCACATGGAACCATGGAAGAAAAAATCTATAAGCGGCAGGTTACTAAAGAAGGGCTTGCTGCAAGGGTGGTCGATAGACAA CAGGTACATAGGACCATTTCGAGAGAGGAAATGTTGCACCTTTTTGAATTCGGAGAGGAGGAAAACCCAGACACGTTGAATGAGAATGGTGAAGAGAACA CCAGTGAAGCTTCAGGGAAGCATAAAGTGCCACTTTTTAACGGAAGCTGCCCTTCAGACAAGGTTATGGAGTGCTTGCTTGGAAACCATCATCCAAGGTG GATTGCCAATTACCACGAACACGAGACGCTTTTGCAAGAGAACGAGGAGGAAAAGCTAACGAAAGAAGAACAGGACATGGCGTGGGAGGTCTATAGGAGA TCGATAGATTGGAAAGAAGTGCAGCATACTCCGGTGGATGAATCTACGATCAATCAGAAGCCGCCTTTGCCGAAAACAGCAACTTCAGCTCCCCAACCAC CCGGTGGACCAACGTGGCCGGAGCAGCAGCAGCGACCCCGTACGGTTTGTAAGGTTGGAAGTCTCGAACTTCCGAGGAACATCCTGAGGAATCGGGTTGC GCAGCGCAAATGCACAAACCTTTCTCATCTGCTGACCCTTAGAAGCCAGGGTACCAAATACGGGTGCACCACGGTGTGTGGAGAATGCGCCAAGGAGATC AAGTGGGAAGATTTGAACAAAGATGGCAAAATGGCCAGATGA
AA sequence Show only first row Show all	>Lus10003572 pacid=23165465 polypeptide=Lus10003572 locus=Lus10003572.g ID=Lus10003572.BGIv1.0 annot-version=v1.0 MEEKHEDYEEVEVASNGSSIGDSDEDEPSTSGQDDDTHLEASCSRYFLSSSLVRVNNYSIDDHLLILQSMEPLTEEEIQELISEFLEVESKAAEAQEALE KESLTKVETEVREELAQTLQGDELEAAVQDEITTLKEEWEAVLDELETESAHLLEQLDGAGIELPSIYKLIESQAPDVCCTEAWKKRTHWVGSQVTTEVK STVADAEKFLQDVRPVRRRHGKLLEEGASGFIQKKVGSVDGKMDYIAENRDKDWDSINKLFSGDIRDGVSSFGSEHWASVYLANTPKEASMMGLKFPGVD EVEEINDIDDNSTNPFVALAIEHENELPLSEEQMKNYKKVKEDDDAKMEVQKLQHHLKKRRRRKKQKQSRDTIMDDSLPTDDSSVVKYQEHGEGVSGNPL VTSCEILGTETLEDGHFDREQPTTDGMSDSCALTFNATRIIGAKRPYEHDNLNVSDKKSRTVDVDSDDVNNMKDNLAGDAIKVEHQAVVQELDQEYRCTA CNKITPEIHSHPLLGVIVCKECKCMVEEKLLLKDPEFYCGWCAQSEDLVSCNSCKNLFCRTCITKNIGQEGCPDSLACGWQCCCCLPNLLDRLTSELEKA VESVHSMDASSDSDSENSGSNINAAISSKRRRKKKIRRILDDAELGEETKRKIAIEKERQEHLKSLKVQFSGKSEMTRPATLHGNLPEGATAEVLGDPIT GYVVNVVRDKGEEAVRIPPSISAKLKAHQVAGIRFMWENIIQSIGRVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVDLGLKTALIVTPVNVLYNW RHEFMKWKPSEVKPIRVFMMEDVSRERRGELLAKWRAKGGVFLIGYTAFRNLSFGRHVKDRNTAREISCALQDSSPVSSYGSKHYYFHHQEGPDILVCDE AHMIKNAKADTTQALKLVKCQRRIALTGSPLQNNLMEYYCKVFLAAAMSSEIGNFQNPIENGQHTNSTSDDVKIMNQRSHILYEELKGFVQRMDMDVVKK DLPPKTVFVITVKLSQLQRKLYKKFLEVHGFASDSIYNERSKRSFFAGYQALAQIWNHPGILQLRKDKDHVSHEEIIENDENSSDENVDHNNILGEKPKN ANSNLQGKSDYGFLVKGWWNELLREDDYKDPNYSGKMVLLLEILTMCSSVGDKALVFSQSIPTLDLIEFHLSRLPRRGKPGKFWRKEKDWYRLDGRTESS ERQKLVERFNDPENKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQKKPVFAYRMMAHGTMEEKIYKRQVTKEGLAARVVDRQ QVHRTISREEMLHLFEFGEEENPDTLNENGEENTSEASGKHKVPLFNGSCPSDKVMECLLGNHHPRWIANYHEHETLLQENEEEKLTKEEQDMAWEVYRR SIDWKEVQHTPVDESTINQKPPLPKTATSAPQPPGGPTWPEQQQRPRTVCKVGSLELPRNILRNRVAQRKCTNLSHLLTLRSQGTKYGCTTVCGECAKEI KWEDLNKDGKMAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08600		ATRX, CHR20	P-loop containing nucleoside t...		Lus10003572 [exp]	0	1
AT5G15020		SNL2	SIN3-like 2 (.1.2)		Lus10032181 [exp]	1.0	0.9481
AT5G56930	C3HZnF	EMB1789	embryo defective 1789, CCCH-ty...		Lus10028950 [exp]	2.0	0.9343
AT2G36850		CHOR, ATGSL8, A...	CHORUS, glucan synthase-like 8...		Lus10040891 [exp]	2.4	0.9113
AT1G32750		GTD1, TAF1, HAF...	TBP-ASSOCIATED FACTOR 1, HISTO...		Lus10027579 [exp]	3.0	0.9321
AT5G26760			unknown protein		Lus10005906 [exp]	3.7	0.9111
AT3G05090		LRS1	LATERAL ROOT STIMULATOR 1, Tra...		Lus10001717 [exp]	4.9	0.9301
AT5G12400			DNA binding;zinc ion binding;D...		Lus10027346 [exp]	5.2	0.9068
AT3G52640			Zn-dependent exopeptidases sup...		Lus10007388 [exp]	6.0	0.9030
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10043456 [exp]	6.3	0.9161
AT3G59410		ATGCN2, GCN2	ARABIDOPSIS THALIANA GENERAL C...		Lus10014896 [exp]	6.9	0.9088

Compare expression of checked genes

Lus10003572 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.