Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05340 377 / 8e-132 Peroxidase superfamily protein (.1) AT5G58400 337 / 8e-116 Peroxidase superfamily protein (.1) AT5G58390 326 / 1e-111 Peroxidase superfamily protein (.1) AT4G36430 309 / 6e-105 Peroxidase superfamily protein (.1) AT2G18150 305 / 4e-103 Peroxidase superfamily protein (.1) AT2G18140 301 / 6e-102 Peroxidase superfamily protein (.1) AT5G66390 301 / 2e-101 Peroxidase superfamily protein (.1) AT1G44970 297 / 4e-100 Peroxidase superfamily protein (.1) AT1G14550 293 / 8e-99 Peroxidase superfamily protein (.1) AT5G06720 292 / 3e-98 ATPA2 peroxidase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032786 [exp] 558 / 0 AT5G05340 403 / 1e-141 Peroxidase superfamily protein (.1) Lus10006534 [exp] 411 / 4e-145 AT5G05340 399 / 3e-140 Peroxidase superfamily protein (.1) Lus10000346 [exp] 402 / 2e-140 AT5G05340 394 / 8e-137 Peroxidase superfamily protein (.1) Lus10034207 [exp] 371 / 2e-129 AT5G05340 454 / 8e-162 Peroxidase superfamily protein (.1) Lus10009932 [exp] 342 / 6e-116 AT5G05340 419 / 6e-146 Peroxidase superfamily protein (.1) Lus10030148 [exp] 335 / 9e-116 AT5G05340 410 / 3e-145 Peroxidase superfamily protein (.1) Lus10030149 [exp] 334 / 2e-114 AT5G05340 405 / 8e-142 Peroxidase superfamily protein (.1) Lus10008581 [exp] 330 / 2e-113 AT5G05340 367 / 6e-128 Peroxidase superfamily protein (.1) Lus10009936 [exp] 328 / 2e-112 AT5G05340 361 / 5e-125 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G143200 [exp] 450 / 1e-160 AT5G05340 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.013G083600 [exp] 374 / 1e-130 AT5G05340 483 / 2e-173 Peroxidase superfamily protein (.1) Potri.013G156500 [exp] 358 / 2e-124 AT5G05340 441 / 1e-156 Peroxidase superfamily protein (.1) Potri.013G154400 [exp] 357 / 4e-124 AT5G05340 363 / 3e-126 Peroxidase superfamily protein (.1) Potri.006G107000 [exp] 342 / 3e-118 AT5G05340 349 / 2e-120 Peroxidase superfamily protein (.1) Potri.016G132900 [exp] 340 / 3e-117 AT5G05340 350 / 6e-121 Peroxidase superfamily protein (.1) Potri.013G156400 [exp] 335 / 1e-114 AT5G05340 412 / 1e-144 Peroxidase superfamily protein (.1) Potri.016G132700 [exp] 332 / 5e-114 AT5G05340 367 / 2e-127 Peroxidase superfamily protein (.1) Potri.013G156800 [exp] 327 / 6e-112 AT5G05340 345 / 7e-119 Peroxidase superfamily protein (.1) Potri.016G132800 [exp] 326 / 1e-111 AT5G05340 336 / 3e-115 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10003573 pacid=23165480 polypeptide=Lus10003573 locus=Lus10003573.g ID=Lus10003573.BGIv1.0 annot-version=v1.0 ATGTCACTGCTGGCCTCTTCAGGAAGCGCTCAGCTCGCCGCCAACTTCTACGCCACCTCATGCCCAACCCTCCTTACTATTGTCCGCAATGCCATGACTC AAGCCGTTAATAGCGAAAACCGCATGGCCGCCTCCATCCTCCGTCTCCACTTTCATGACTGCTTCGTTAATGGTTGTGATGGGTCGCTACTGTTGGACGA TACTGCCACTTTCACTGGCGAGAAGAACGCAGGACCCAACCAAAACTCTGTTAGAGGGTTCGACATAATAGACACGATCAAGACCAGAGTTGAGGCAGCA TGCAACGCCACCGTGTCTTGCGCTGACATCCTTGCTCTCGCAGCCAGAGACGGTGTCGTATTGGTAGGCGGGCCCACATGGACGGTCCCACTAGGCCGAC GCGACGCGCGGACGGCGAGCCAGAGCGCAGCCAACGCACAAATCCCAGCCCCAGGGTCAAGCCTAGGAACGATAACCAACTTGTTCACGAACAAGGGCCT CACCGCCCGTGACGTCACAATCCTGTCGGGGGCCCACACGATCGGGCAGGCGCGTTGCACCACGTTCCGCCAGCGGATCTACAACGACACCAACATCGAC CCGGCGTTCGCCACCACCCGGAGGGGGAACTGCCCGCAGGCCGGAGCCGGAGCCAACCTCGCACCGCTGGACGGAACCCCGACCCAGTTCGACAACAGGT ATTACCAGGATCTGGTGGCGAGGCGCGGGCTGCTCCATTCGGATCAGGAGCTGTTCAACAACGGGACTCAGGACGCGCTGGTGAGGACTTACAGCAACAA TGCGGCTACTTTTGCTACGGATTTCGCCGCCGCTATGGTGAGGATGGGGAACATCAGCCCGTTGACCGGGACCAACGGGGAGATCAGATTTAACTGCAGG AGGCCTAATTAA
AA sequence Show only first row Show all	>Lus10003573 pacid=23165480 polypeptide=Lus10003573 locus=Lus10003573.g ID=Lus10003573.BGIv1.0 annot-version=v1.0 MSLLASSGSAQLAANFYATSCPTLLTIVRNAMTQAVNSENRMAASILRLHFHDCFVNGCDGSLLLDDTATFTGEKNAGPNQNSVRGFDIIDTIKTRVEAA CNATVSCADILALAARDGVVLVGGPTWTVPLGRRDARTASQSAANAQIPAPGSSLGTITNLFTNKGLTARDVTILSGAHTIGQARCTTFRQRIYNDTNID PAFATTRRGNCPQAGAGANLAPLDGTPTQFDNRYYQDLVARRGLLHSDQELFNNGTQDALVRTYSNNAATFATDFAAAMVRMGNISPLTGTNGEIRFNCR RPN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05340			Peroxidase superfamily protein...		Lus10003573 [exp]	0	1
AT5G05340			Peroxidase superfamily protein...		Lus10032786 [exp]	2.4	0.9663
AT4G27290			S-locus lectin protein kinase ...		Lus10014813 [exp]	3.2	0.9535
AT4G12490			Bifunctional inhibitor/lipid-t...		Lus10024621 [exp]	3.7	0.8769
					Lus10021406 [exp]	5.7	0.9523
AT5G22860			Serine carboxypeptidase S28 fa...		Lus10005354 [exp]	5.7	0.9456
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Lus10028628 [exp]	6.3	0.8635
AT3G60290			2-oxoglutarate (2OG) and Fe(II...		Lus10018950 [exp]	7.1	0.9405
					Lus10021407 [exp]	7.7	0.9401
AT3G47570			Leucine-rich repeat protein ki...		Lus10016896 [exp]	8.4	0.9334
AT3G47570			Leucine-rich repeat protein ki...		Lus10004388 [exp]	9.9	0.9137

Compare expression of checked genes

Lus10003573 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.