Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45440 162 / 3e-46 Concanavalin A-like lectin protein kinase family protein (.1) AT5G60280 155 / 1e-43 Concanavalin A-like lectin protein kinase family protein (.1) AT3G45330 152 / 7e-43 Concanavalin A-like lectin protein kinase family protein (.1) AT5G60270 150 / 8e-42 Concanavalin A-like lectin protein kinase family protein (.1) AT4G29050 149 / 2e-41 Concanavalin A-like lectin protein kinase family protein (.1) AT3G45410 148 / 2e-41 Concanavalin A-like lectin protein kinase family protein (.1) AT5G59260 147 / 5e-41 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53810 145 / 2e-40 Concanavalin A-like lectin protein kinase family protein (.1) AT3G45420 144 / 7e-40 Concanavalin A-like lectin protein kinase family protein (.1) AT5G60320 143 / 2e-39 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001562 [exp] 348 / 4e-117 AT3G53810 655 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004982 [exp] 344 / 2e-115 AT3G53810 664 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016507 [exp] 264 / 1e-84 AT3G53810 705 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040774 [exp] 257 / 1e-81 AT3G53810 713 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016506 [exp] 188 / 7e-56 AT3G53810 651 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040773 [exp] 182 / 1e-53 AT3G53810 654 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10003224 [exp] 155 / 7e-44 AT3G53810 781 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10001564 [exp] 153 / 8e-43 AT3G53810 639 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004980 [exp] 152 / 1e-42 AT3G53810 640 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G035800 [exp] 190 / 2e-57 AT3G53810 540 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G035701 [exp] 185 / 2e-55 AT3G53810 585 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G036300 [exp] 182 / 1e-53 AT3G53810 630 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G035500 [exp] 179 / 2e-52 AT3G53810 598 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G035601 [exp] 178 / 2e-52 AT3G45430 498 / 3e-169 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G036500 [exp] 173 / 3e-50 AT5G60280 617 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G244000 [exp] 170 / 3e-49 AT3G53810 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G035400 [exp] 166 / 7e-48 AT3G53810 629 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G036100 [exp] 162 / 2e-46 AT3G53810 617 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G088900 [exp] 157 / 1e-44 AT2G37710 801 / 0.0 receptor lectin kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10003574 pacid=23165473 polypeptide=Lus10003574 locus=Lus10003574.g ID=Lus10003574.BGIv1.0 annot-version=v1.0 ATGCGCAGCCCGGAGTTCCAGGACATCAACGACAACCACGTCGGAACCGACTTAAACACGTTGATCTTCGTCTCCCCTGCCCCCGTGTCCTGGATCTCCG ACCAGGACGGCGTCAACCGCACCCTCCGCCTCCTCAGCGGCGACAGAATCCAGGTTTGGATCCGCTACGACGACTCAGCCAAACAAATGAACGTCACCGT CGCTCCGTTCGAAACCCCTAAGCCTAACCGTCCTCTAATCTCAACCGATCTCGATCTCTCCACTCACTTCGTCGAGTCGATGTTCGTTGGATTCTCTTCC TCCACTAGCACCGTCATCATCGCGCAGTACATAGTCGGATGGAGCTTCAGTAAATCGGCAAACTCTCATCCTCCGCCGCTGGATCTTCAATCGCTTCCAG TATCTCCACGGTCGGCCAAGCTTCAGAAGAAACTAGGAGTCGGAATCGAAACCTACGCTGTTCAATTGAGGAGATATAGAGAGCTGAGAGAAGATTGGGA GAAGGAATACAATCCGGAGCGGCTTTCGTACAGAGACTTGTACATAGCGACTCACGGGTTCAAGGAGAAGCAGGTTCTCGGGTCGGGCGGGTTCGGGAAA GTCATAGGGGGTTCCTATTCACGGATAGGTCGGTTGCTTACGTCCACCTATCGTAAATGCTAG
AA sequence Show only first row Show all	>Lus10003574 pacid=23165473 polypeptide=Lus10003574 locus=Lus10003574.g ID=Lus10003574.BGIv1.0 annot-version=v1.0 MRSPEFQDINDNHVGTDLNTLIFVSPAPVSWISDQDGVNRTLRLLSGDRIQVWIRYDDSAKQMNVTVAPFETPKPNRPLISTDLDLSTHFVESMFVGFSS STSTVIIAQYIVGWSFSKSANSHPPPLDLQSLPVSPRSAKLQKKLGVGIETYAVQLRRYRELREDWEKEYNPERLSYRDLYIATHGFKEKQVLGSGGFGK VIGGSYSRIGRLLTSTYRKC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45330			Concanavalin A-like lectin pro...		Lus10003574 [exp]	0	1
AT3G19260		LOH2, LAG1 HOMO...	LONGEVITY ASSURANCE GENE1 HOMO...		Lus10014055 [exp]	14.8	0.6305
					Lus10024688 [exp]	28.6	0.5796
AT1G18600		ATRBL12	ARABIDOPSIS RHOMBOID-LIKE PROT...		Lus10007614 [exp]	29.0	0.6212
AT2G14750		APK1, ATAKN1, A...	ADENOSINE-5'-PHOSPHOSULFATE \(...		Lus10033788 [exp]	31.8	0.6143
AT4G03080		BSL1	BRI1 suppressor 1 (BSU1)-like ...		Lus10024772 [exp]	40.2	0.5918
AT5G25050			Major facilitator superfamily ...		Lus10026893 [exp]	46.4	0.5920
AT5G50350			unknown protein		Lus10034861 [exp]	50.3	0.5788
AT5G14030			translocon-associated protein ...		Lus10041525 [exp]	51.5	0.5921
AT3G57080		RPB5B, NRPE5	RNA POLYMERASE II FIFTH LARGES...		Lus10042019 [exp]	190.6	0.4863

Compare expression of checked genes

Lus10003574 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.