Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18390 624 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 154 / 2e-40 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G65820 150 / 3e-39 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 140 / 5e-36 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G06000 137 / 4e-35 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) AT1G62930 137 / 5e-35 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G79540 137 / 1e-34 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 135 / 3e-34 RPF2 rna processing factor 2 (.1) AT5G15010 134 / 4e-34 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G60050 133 / 4e-34 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032787 [exp] 906 / 0 AT5G18390 625 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001588 [exp] 148 / 1e-38 AT1G77360 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10034419 [exp] 147 / 2e-38 AT1G73400 684 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012068 [exp] 146 / 2e-37 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 145 / 2e-37 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019141 [exp] 144 / 2e-37 AT1G73400 672 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021074 [exp] 140 / 4e-37 AT1G62930 273 / 5e-86 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 144 / 7e-37 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030887 [exp] 140 / 3e-36 AT1G52640 658 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G025700 [exp] 694 / 0 AT5G18390 637 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G032600 [exp] 164 / 3e-44 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G034300 [exp] 152 / 4e-41 AT1G62930 397 / 4e-133 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G034200 [exp] 153 / 1e-40 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G200800 [exp] 153 / 7e-40 AT5G06400 1132 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G034400 [exp] 148 / 9e-39 AT3G22470 476 / 1e-161 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G038300 [exp] 147 / 2e-38 AT1G12700 490 / 8e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050180 [exp] 144 / 2e-37 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.002G109500 [exp] 142 / 1e-36 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.002G176100 [exp] 142 / 1e-36 AT3G49730 783 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10003575 pacid=23165482 polypeptide=Lus10003575 locus=Lus10003575.g ID=Lus10003575.BGIv1.0 annot-version=v1.0 ATGCTCCGCTCCACCGCACTGCTTCTCTCCAGAGCCACCTCCGCCGCTCTCACACTTCCTATCTCCCGCCGCTGCAGCGTCCAGACATTAGCTCCCAACA AAGACGCCTACTTCGCCGCCATCCACCAGATAACCCACATAGTCCGCCGCGACATCTACCCCGAACGCACCCTCAACAAGCTCAACCTCCCCGTCACCTC CGAGCTCGTCTTCCGCGTCCTCCGCGCTCTCTCCCATTCCCCCACCGAGTCCATACGCTTCTTCGCCTGGGCGCGTGGCCACTACACTCCGACCTCCATC GAAGTCGAGGAGCTCATCAAAACCCTAGCTCGCGGCAAGAGGTACGCTTCAATGTGGCGGCTCATTTCCCAGATGAGAGATCAGAGCAAACGGATGGTCA ACACTCCTGAACACGAGAGAGCCTTCACCGTTTCCAGCGACACTGTTTGTTTCATCATCGAGGAGTACGGCAAAGGCGGGCTCGTAGACCAGGCGATCCA GGTTTTTAACAAGTGTAGTAGCTTGAATTGCGAACAAGGCGTTGAGGTTTACAATTCACTGCTTTCCGCTCTGTGTGATGTTAAGATGTTTCATGGAGCT TATGCTTTGATTAGGAGGATGGTTAGGAAAGGATTGGTTCCGAATAAGCGTACCTATGCTGTTCTTGTCAACGGATGGTGTTCTAGTGGGAAATTTAGAG AAGCTCAAGAGTTTTTGGATGAGATGAGTAAGAAGGGATTCAATCCGCCTGTTAGAGGTAGGGATTTGTTGATTGAAGGTTTGTTGAATGCAGGGTATTT AGAGACTGCCAAGGATCTGGTTAGGAAAATGACTAAGGAAGGTTTCGTCCCCGATGTCAATACCTTCAATACTCTTGTCGAAGCGATTTGTCAAACTGGT GGGGAGATCGAGATCGATTTTTGCGTTGAGATGTATCATAATGTGTGCAGGTTGGGACTCTGTCCTGATATAAACAGTTATAAGATACTGATTCCTGCTG TTTCGAGAGTTGGCAAGATGAATGAAGCTTTCAAGCTGTTGCATAGTTCGATTGAGCAGGGGCACAAGCCGTTTCCGAGTTTGTATGCGCCTATAATCAA GGGGCTGTGCAGGATAGGGAAATTCGACGATGCATTTTGTTTCTTTGGGGAAATGAAGGTGAAAGGTCACCCTCCGAATAGGCCGGTTTATACGATGCTG ATTACCATGTGTGGGCGTGGTGGGAAGTATATGGAGGCGGCGAGTTATTTGTTGGAGATGACTGAGGTGGGTTTGAAACCAATTTCGAGATGTTTTGATC TTGTTGTTGATGGGTTGAAGAATTGTGGGAAGCATGATCTGGCTAAGCGAATCGAGCAGTTGGAAGTGTCTCTTTGCCAAGCGTGA
AA sequence Show only first row Show all	>Lus10003575 pacid=23165482 polypeptide=Lus10003575 locus=Lus10003575.g ID=Lus10003575.BGIv1.0 annot-version=v1.0 MLRSTALLLSRATSAALTLPISRRCSVQTLAPNKDAYFAAIHQITHIVRRDIYPERTLNKLNLPVTSELVFRVLRALSHSPTESIRFFAWARGHYTPTSI EVEELIKTLARGKRYASMWRLISQMRDQSKRMVNTPEHERAFTVSSDTVCFIIEEYGKGGLVDQAIQVFNKCSSLNCEQGVEVYNSLLSALCDVKMFHGA YALIRRMVRKGLVPNKRTYAVLVNGWCSSGKFREAQEFLDEMSKKGFNPPVRGRDLLIEGLLNAGYLETAKDLVRKMTKEGFVPDVNTFNTLVEAICQTG GEIEIDFCVEMYHNVCRLGLCPDINSYKILIPAVSRVGKMNEAFKLLHSSIEQGHKPFPSLYAPIIKGLCRIGKFDDAFCFFGEMKVKGHPPNRPVYTML ITMCGRGGKYMEAASYLLEMTEVGLKPISRCFDLVVDGLKNCGKHDLAKRIEQLEVSLCQA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18390			Pentatricopeptide repeat (PPR)...		Lus10003575 [exp]	0	1
AT2G30160			Mitochondrial substrate carrie...		Lus10042258 [exp]	4.9	0.8345
AT3G25210			Tetratricopeptide repeat (TPR)...		Lus10025890 [exp]	5.7	0.7998
AT4G18520			Pentatricopeptide repeat (PPR)...		Lus10039594 [exp]	7.1	0.8267
AT1G77405			Pentatricopeptide repeat (PPR)...		Lus10029697 [exp]	8.5	0.8246
AT3G62630			Protein of unknown function (D...		Lus10020690 [exp]	9.5	0.8035
AT4G18520			Pentatricopeptide repeat (PPR)...		Lus10029482 [exp]	10.2	0.8229
AT3G06130			Heavy metal transport/detoxifi...		Lus10021941 [exp]	14.1	0.8112
AT2G44530			Phosphoribosyltransferase fami...		Lus10012074 [exp]	17.0	0.7913
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10028249 [exp]	17.5	0.7966
AT2G46940			unknown protein		Lus10007198 [exp]	17.9	0.7702

Compare expression of checked genes

Lus10003575 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.