Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04240 1556 / 0 SEC secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G11540 270 / 1e-76 SPY SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G32450 86 / 7e-17 Calcium-binding tetratricopeptide family protein (.1) AT1G05150 85 / 2e-16 Calcium-binding tetratricopeptide family protein (.1) AT1G12270 71 / 2e-12 Hop1 Hop1, stress-inducible protein, putative (.1) AT4G12400 63 / 8e-10 Hop3 Hop3, stress-inducible protein, putative (.1.2) AT5G56290 63 / 9e-10 EMB2790, PEX5, ATPEX5 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1) AT1G27460 60 / 9e-09 NPGR1 no pollen germination related 1 (.1) AT1G78770 59 / 1e-08 APC6 anaphase promoting complex 6 (.1) AT2G20000 58 / 4e-08 CDC27b, HBT HOBBIT, CDC27 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003113 [exp] 1710 / 0 AT3G04240 1687 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004779 [exp] 1705 / 0 AT3G04240 1683 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003112 [exp] 312 / 5e-100 AT3G04240 305 / 2e-98 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021336 [exp] 277 / 5e-79 AT3G11540 1509 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10017009 [exp] 258 / 4e-71 AT3G11540 1356 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10033182 [exp] 91 / 2e-18 AT2G32450 1323 / 0.0 Calcium-binding tetratricopeptide family protein (.1) Lus10010627 [exp] 91 / 3e-18 AT2G32450 1148 / 0.0 Calcium-binding tetratricopeptide family protein (.1) Lus10033033 [exp] 66 / 1e-10 AT5G63200 542 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1) Lus10012968 [exp] 61 / 4e-09 AT2G20000 1126 / 0.0 HOBBIT, CDC27 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G051400 [exp] 1622 / 0 AT3G04240 1684 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.019G025600 [exp] 1611 / 0 AT3G04240 1689 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G208900 [exp] 293 / 1e-84 AT3G11540 1506 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.016G075700 [exp] 282 / 7e-81 AT3G11540 1505 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G234900 [exp] 93 / 5e-19 AT1G05150 1239 / 0.0 Calcium-binding tetratricopeptide family protein (.1) Potri.002G027900 [exp] 86 / 9e-17 AT1G05150 1226 / 0.0 Calcium-binding tetratricopeptide family protein (.1) Potri.001G119500 [exp] 62 / 2e-09 AT4G12400 864 / 0.0 Hop3, stress-inducible protein, putative (.1.2) Potri.001G389300 [exp] 59 / 1e-08 AT1G78770 911 / 0.0 anaphase promoting complex 6 (.1) Potri.001G473100 [exp] 58 / 3e-08 AT5G56290 978 / 0.0 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1) Potri.006G164000 [exp] 58 / 4e-08 AT2G20000 1098 / 0.0 HOBBIT, CDC27 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10003576 pacid=23165472 polypeptide=Lus10003576 locus=Lus10003576.g ID=Lus10003576.BGIv1.0 annot-version=v1.0 ATGATTTCATTGCAGAACGGAGTTCGGGTTTCGGCTCGTGATGAAGCAGCTACTGGCTTTCATGTGTCATCGGCTTCTTCAGCTGGTCTAGCACCTTTCT TTGCTCGCGATACATCTCACCATGAAGTTGATGAAGATACACACTTGGCGCTTGCCCATCAGATGTACAAATCTGGATGCTACAAACAGGCATTAGAGCA CAGCCATGTCCTCTATGAGAGGAATCCTCTTCGAACGGATAATCTACTTCTATTGGGGGCTGTTTATTTTCAGCTGCATGATTATGATACGTGCATTGCT AAAAATGAAGAAGCTCTTCGACTAGAGCCTCGACTGGCCGAGTGTTATGGAAATATGGCAAATGCCTGGAAGGAAAAAGGAGATAATGATATGGCAATTC GTTACTACCTGGTTGCCATTGAGCTCCGTCCCAATTATGCTGATGCTTGGTCTAATTTGGCTAGTGCATACACGCTCAAAGGAAGAATCAATGACGCTGC TCAGTGTTGTCGTCAGGCGTTAGCTCTGAATCCTCTCCTGGTTGATGCTCATAGCAATCTTGGGAATTTGATGAAGGCACAAGGCCTGATGCAAGAAGCA TATAAATGCTATGTTGAGGCTCTGCAAATACAACCTACTTTTGCTATTGCGTGGTCGAATCTTGCTGGTCTATTAATGCAGCTTGGTGACATGCCTAGAG CGCTTCAGTTCTATGAGGAAGCCGTAAAGCTTAAGCCTTCATTTCCTGATGTATACTTAAACCTAGGAAATGTTTATCAGGGCTTGGGTAGACTTCAAGA TGCTATTACGTGCTATCAGCATGCTATTCAAATTAGACCTAACTATGCAATAGCATATGGAAATTTGGCTAGTACATATTACGAGGGAGGGCAACTGGAT TTGGCAATTCATCATTTCAAGCAAGCCATTACTATTGATCCCAGATACACAGAGGCTTATAATAATTTGGGTAATGTACTAAAAGATTTGGGTGGCGTGA ACGAGGCAGTTCAATGCTATAGTCAATGCCTTGCATTACAACCTAGCCATCCGCAAGCTCTTACAAACCTTGGGAACATATACATGGATTGGAACATGCC AGCTGCAGCGGCTTCATACTACAAAGCAACTCTTGCTGTGACCACTGGACTATCTGCTCCTTTCAACAATCTTGCTATCATCTACAAGCAACAGGGAAAT TATGCAGATGCCATATCTTGCTATAATGAGGTCCTTAGGATTGATCCCTCTGCTGCTGATGGTCTTGTGAATAGAGGCAACACATACAAGGAAATTGGTA GAGTTACTGAAGCTATACAAAATTACATCAGTGCTATTAATGTCCGACCGAGTATGCCTGAAGCCCATGCAAACTTGGCCTCGGCCTACAAGGACAGTGG GCATGTGGAAGCTGCGGTGAAGTGCTATAGACAGTCATTGCTCCTTCGACCAGATTTTCCCGAGGCAACATGTAATCTTCTGCACACACTGCAGTGTGTA TGTAGCTGGGAGGGGCGTGATAAGATGTTTAATGAAGTTGAAGGGATCATCCGGAGACAGATCAATTCCTCTGCTCTCCCCAGCGTACAACCTTTTCATG CTATAGCATATCCCTTGGATCCGATGCTTGCTTTAGAAATCAGCCGTAAATATGCTGCTCATTGTTCAAATATTGCATCTCGTTTTGCACTCTCGCCATT CAATCACCCTCCCCCAATCCCCATTAATCATGATCATGGAAATCAAAGGCTTAGGGTGGGATATGTGAGTAGTGACTTCGGCAATCATCCTTTGTCACAC CTCATGGGATCTGTATTTGGCATGCACAACCGAGTCAATATCGAGGTGTTCTGCTATGCTTTGAGTGTCAATGATGGCACTGAGTGGAGGCAGCGTATCC AGTCTGAAGCTGAGCGTTTCATTGATGTTTCTACCATGTCGTCAGATACGATTGCTAAATTGATTAATGATGATAAGATACAGATCCTAATCAATCTGAA TGGTTACACAAAGGGTGCAAGAAATGAGATTTTTGCTATGAGACCGGCTCCAGTTCAGGTTTCATACATGGGCTTCCCTGGAACTACGGGAGCAACTTAC ATAGATTATTTGGTCACTGATGAGTTTGTTTCACCTGTGCAATATGCGCACATCTACTCTGAGAAACTTGTTCATCTGCCTCATTGCTATTTCGTTAATG ATTACAGACAGGCAAGTGATAATCTTATAAAAAATCTGGATGTGTTGGATCCGAAGTGCCAGCACAAACGATCAGATTATGGACTTCCGGAAGATAAATT CATATTTGCTTGCTTCAACCAGTTGTACAAAATGGATCCTGAAATCTTTAACACATGGTGCAACATCCTGAAACGGGTACCGAACAGTGCTCTTTGGCTA CTTAGGTTCCCTGCAGCTGGGGAAATGAGACTTCGTGAATATGCTGTTGCTCAAGGAGTGCAGCCAGACCAGATTACTTTTACCGACGTTGCGATGAAAC AAGAACATATCAGACGAAGTGCTCTAGCAGATCTATTCCTCGACACGCCATTGTGCAATGCTCATACAACGGGGACCGATATTTTATGGGCGGGTTTACC GATGGTGACACTGCCCCTCGAAAAAATGGCCACCAGAGTTGCTGGATCACTATGTGAGGCCACCGGACTTGGCGAGGAGATGATAGTTAGCAGTATGCAA GAGTACGAAGAGAGGGCAGTATCTCTGGCTTTGAATCAGTCGAAATTGCAGGCTCTAACCAACAGGCTGAAGTCAGTTCGGCTTACTTGTCCTCTATTCG ATACGCCGCGCTGGGTGAAGAATCTTGATCGGGCATATATGAAGATGTGGAGTATTTACTGCGCGGGGAAGGAACCGCATCACTTCAAGGTCACTGAGAA TGATTTGGAATTCCCTTATGATAGGTCGTCGTCATGA
AA sequence Show only first row Show all	>Lus10003576 pacid=23165472 polypeptide=Lus10003576 locus=Lus10003576.g ID=Lus10003576.BGIv1.0 annot-version=v1.0 MISLQNGVRVSARDEAATGFHVSSASSAGLAPFFARDTSHHEVDEDTHLALAHQMYKSGCYKQALEHSHVLYERNPLRTDNLLLLGAVYFQLHDYDTCIA KNEEALRLEPRLAECYGNMANAWKEKGDNDMAIRYYLVAIELRPNYADAWSNLASAYTLKGRINDAAQCCRQALALNPLLVDAHSNLGNLMKAQGLMQEA YKCYVEALQIQPTFAIAWSNLAGLLMQLGDMPRALQFYEEAVKLKPSFPDVYLNLGNVYQGLGRLQDAITCYQHAIQIRPNYAIAYGNLASTYYEGGQLD LAIHHFKQAITIDPRYTEAYNNLGNVLKDLGGVNEAVQCYSQCLALQPSHPQALTNLGNIYMDWNMPAAAASYYKATLAVTTGLSAPFNNLAIIYKQQGN YADAISCYNEVLRIDPSAADGLVNRGNTYKEIGRVTEAIQNYISAINVRPSMPEAHANLASAYKDSGHVEAAVKCYRQSLLLRPDFPEATCNLLHTLQCV CSWEGRDKMFNEVEGIIRRQINSSALPSVQPFHAIAYPLDPMLALEISRKYAAHCSNIASRFALSPFNHPPPIPINHDHGNQRLRVGYVSSDFGNHPLSH LMGSVFGMHNRVNIEVFCYALSVNDGTEWRQRIQSEAERFIDVSTMSSDTIAKLINDDKIQILINLNGYTKGARNEIFAMRPAPVQVSYMGFPGTTGATY IDYLVTDEFVSPVQYAHIYSEKLVHLPHCYFVNDYRQASDNLIKNLDVLDPKCQHKRSDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILKRVPNSALWL LRFPAAGEMRLREYAVAQGVQPDQITFTDVAMKQEHIRRSALADLFLDTPLCNAHTTGTDILWAGLPMVTLPLEKMATRVAGSLCEATGLGEEMIVSSMQ EYEERAVSLALNQSKLQALTNRLKSVRLTCPLFDTPRWVKNLDRAYMKMWSIYCAGKEPHHFKVTENDLEFPYDRSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04240		SEC	secret agent, Tetratricopeptid...		Lus10003576 [exp]	0	1
AT4G20910		CRM2, HEN1	HUA ENHANCER 1, CORYMBOSA 2, d...		Lus10023257 [exp]	3.5	0.8915
AT4G20910		CRM2, HEN1	HUA ENHANCER 1, CORYMBOSA 2, d...		Lus10038546 [exp]	3.9	0.8382
AT5G48120			ARM repeat superfamily protein...		Lus10011436 [exp]	5.7	0.8922
AT1G26170			ARM repeat superfamily protein...		Lus10035079 [exp]	6.7	0.8719
AT3G27390			unknown protein		Lus10022317 [exp]	7.1	0.8358
AT4G21520			Transducin/WD40 repeat-like su...		Lus10018434 [exp]	14.1	0.8601
AT2G32010		CVL1	CVP2 like 1 (.1.2)		Lus10039352 [exp]	16.7	0.8260
AT3G43920		DCL3, ATDCL3	dicer-like 3 (.1.2.3)		Lus10016367 [exp]	17.0	0.8689
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Lus10013443 [exp]	17.1	0.8605
AT4G17610			tRNA/rRNA methyltransferase (S...		Lus10011019 [exp]	24.5	0.8631

Compare expression of checked genes

Lus10003576 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.