Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04260 1030 / 0 PDE324, PTAC3 PIGMENT DEFECTIVE 324, plastid transcriptionally active 3 (.1) AT1G12620 78 / 1e-14 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 72 / 1e-12 RPF2 rna processing factor 2 (.1) AT3G16710 71 / 2e-12 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G38730 67 / 4e-11 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12300 66 / 9e-11 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G31400 66 / 1e-10 GUN1 genomes uncoupled 1 (.1) AT5G04810 65 / 2e-10 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G06710 62 / 1e-09 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62910 62 / 1e-09 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029697 [exp] 65 / 2e-10 AT1G77405 613 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008650 [exp] 65 / 3e-10 AT5G12100 702 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10018318 [exp] 64 / 4e-10 AT2G35130 801 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10043434 [exp] 63 / 9e-10 AT5G04810 1108 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10037592 [exp] 62 / 1e-09 AT1G51965 792 / 0.0 ABA Overly-Sensitive 5 (.1) Lus10034149 [exp] 61 / 3e-09 AT5G04810 1157 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10003427 [exp] 60 / 5e-09 AT1G12700 291 / 8e-92 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10021074 [exp] 60 / 5e-09 AT1G62930 273 / 5e-86 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039056 [exp] 60 / 6e-09 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G025100 [exp] 1026 / 0 AT3G04260 1230 / 0.0 PIGMENT DEFECTIVE 324, plastid transcriptionally active 3 (.1) Potri.005G050240 [exp] 79 / 7e-15 AT1G12700 465 / 1e-155 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G245500 [exp] 77 / 2e-14 AT1G20300 571 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G193900 [exp] 76 / 1e-13 AT2G31400 1192 / 0.0 genomes uncoupled 1 (.1) Potri.005G245400 [exp] 72 / 1e-12 AT1G20300 768 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G118500 [exp] 71 / 3e-12 AT2G31400 1213 / 0.0 genomes uncoupled 1 (.1) Potri.005G050180 [exp] 70 / 4e-12 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050500 [exp] 69 / 1e-11 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.008G017400 [exp] 68 / 2e-11 AT5G04810 1278 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.005G050300 [exp] 67 / 2e-11 AT1G12700 466 / 5e-156 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10003578 pacid=23165466 polypeptide=Lus10003578 locus=Lus10003578.g ID=Lus10003578.BGIv1.0 annot-version=v1.0 ATGTCACTCCTCTTCCTCCCTACTCCTCACTTCTTCGCGCCCATAAACTCTACCCTCTCTTCTCCATTTCGCTCCCGATTCGCCGGAGTTCGGGCCTCCA CCTCCGCTCCGCCGCCAACAAAGAGAAAACCTAGAAGGAGGAAGAAACAACAGCAGCAAGGCAATGGTAATGCTTCCTCGTCGTCTTCTCGCGGGTACAC GATTACAACCGCCACCGAGAGATCCCTACGGTTCGCCTTCATGGAGGAGCTCATGGACCGGGCGAGGAATCGCGACGTCGACGGTGTGTCGGACGTAATC TACGATATGATTGCTGCCGGGCTGAAGCCTGGTCCAAGGTCGTTTCACGGTCTCGTCGTTGCTAATGTCCTCAACGGCGACCATGAAGGCGCGATGCAAT CTCTGAGAAGAGAGTTGAGCACGGGGCAACGCCCTCTTCATGAAACCTTCGTTGCTTTGATTCGGGTGTTTGCCTCGAAAGGGATGGCCACCAAGGCTTT GGAAATGCTTGCTGCGATGGAGAGTTTAAAATATGACATTCGTCAAGCCTGGATAATTCTTGTTGAGGAGCTTCTTAAGCACAAATATATGGAGGATGCA AACAGTGTGTTCTTGAAGGGTGCTAAAGGTGGTCTTAGAGCTACTGATGAGCTCTATGATCGTATAATCCAGGAAGACTGTCTGGCCGGGGATCATTCTA ATGCCCTAGACATTGCCTATGAAATGGAAGCCTCAGGCCGAATGGCTACTACTTTCCATTTCAATTGCCTTCTAAGTGTGCAGGCTACTTGTGGAATACC CGAGGTAGCTATGGCCACATTTGAGAACATGGAATACGGAGAAGCTTATATGAAGCCTGATACGGAGACATATAACTGGGTGATCCAAGCATATACTAGA GCCGAGTCATATGATAGGGTCCAAGATGTCGCGGAATTGCTTGGAATGATGGTTGAAGACCACAAACGACTGCAACCTAATGTGAGAACTTATGCGCTGT TAGTGGAGTGCTTTACCAAGTACTCTGTCATACGTGAAGCTATCCGACATTTCCGTGCTCTTAAGAATTTTGATGGAGGAATGAAACTCTTGCATTGTGA AGGGAACTTCGGCGACCCACTTGCTCTGTATTTGCGGGCTTTATGTCGAGAAGGAAGGATCGTTGAATTGCTTGAAGCTTTGGAAACTATGGCCAAAGAT GGTCAGCCTATTCCTCCAAGAGCCATGTTATTAAACAGGAAGTATCGAACATTAGTTAGCTCTTGGATTGAACCCATGCAAGAAGAAGCTCAACTTGGCT ACGAAGTTGATTATGTTGCAAGGTATGTTGAAGAAGGAGGACTAACCGGTGATCGTAAGCGATGGGTACCTAGAAGAGGGAAAGCTCTAGATCCTGATAC TGAGGGATTCATATATTCAGGCCCTATAGAAACTTCCTTTAAGCAAAGATGTCTTGATGAATGGAAGTTGTACCATAGAAAACTTCTGAAAATGCTTCGT AATGAAGGAATTGCTGTGCTGGGAGGTGCATCTGAATCTGATTATTTAAGAGTTGAACAAAAACTAATCGGGATAATTAAAGGTCCAAGCCGCAACGTTC TCAAGCCCAAGGCTGCTAGTAAGATGTTAGTAGGTGAAATGAGGGAAGAATTAGAAGCTCAAGGATTACCGACTGATGGAACTAGGAATATTTTATATCA GCGGGTTCAGAAAGCAAGAAGAATAAACCGTTCTCGCGGGAGGCCCCTTTGGGTTCCTCCAGTGCAAGAGAAAGAAGAAGATCTGGTTAATGAAGAGCTT GATGAACTTATTTCGAGGATCAAGCTACAAGATGGAAATACAGAGTTCTGGAGGCGGCGGTTCCTCGCAGAAGGAATAAAAACTGACGAAGCTAAGACCA TCGACGTTGAGGCATCAGAAACTTCTTCAGAAGTTTCGGATGAGGTGGATTCGGCAGATGATGTTCCGGAGGATGTTGAAGATGAGGAAGGTGATGAAGA TGAAGGTGAGGAAGTAGAAGTAGAAGTGGAAGTAGAACAAACTAAGAACCAAACTGTTGACACGGTTGTTAAGCAGAAGGAAGTTGATGATGCTAAGCAT CCTCTTCAGATGATGGGGATACAACTATTAATGGATTCCGATCAGACAAATTTGTCGTCAAAGAAATCAAGAAGAAAATCTAGAATGTCCTTTGAGGACG ACAGCGACGAGGACTGGTTTCCTCTAGACCCGTTCGCGGCATTCAAAGAGTTGAGGGAACGGAAATTTTTCGATATAGATGACATGTATACAATAGCCGA TGTATGGGGCTGGACATGGGAGAGAGAAATAAGGAATACGTGTCCCCGGAAGTGGTCACCGGAATGGGAAGTTGAGTTGGCAATCAAACTAACAGAGAAG GCAATGCTTCAACGCCTCCCCACTTAG
AA sequence Show only first row Show all	>Lus10003578 pacid=23165466 polypeptide=Lus10003578 locus=Lus10003578.g ID=Lus10003578.BGIv1.0 annot-version=v1.0 MSLLFLPTPHFFAPINSTLSSPFRSRFAGVRASTSAPPPTKRKPRRRKKQQQQGNGNASSSSSRGYTITTATERSLRFAFMEELMDRARNRDVDGVSDVI YDMIAAGLKPGPRSFHGLVVANVLNGDHEGAMQSLRRELSTGQRPLHETFVALIRVFASKGMATKALEMLAAMESLKYDIRQAWIILVEELLKHKYMEDA NSVFLKGAKGGLRATDELYDRIIQEDCLAGDHSNALDIAYEMEASGRMATTFHFNCLLSVQATCGIPEVAMATFENMEYGEAYMKPDTETYNWVIQAYTR AESYDRVQDVAELLGMMVEDHKRLQPNVRTYALLVECFTKYSVIREAIRHFRALKNFDGGMKLLHCEGNFGDPLALYLRALCREGRIVELLEALETMAKD GQPIPPRAMLLNRKYRTLVSSWIEPMQEEAQLGYEVDYVARYVEEGGLTGDRKRWVPRRGKALDPDTEGFIYSGPIETSFKQRCLDEWKLYHRKLLKMLR NEGIAVLGGASESDYLRVEQKLIGIIKGPSRNVLKPKAASKMLVGEMREELEAQGLPTDGTRNILYQRVQKARRINRSRGRPLWVPPVQEKEEDLVNEEL DELISRIKLQDGNTEFWRRRFLAEGIKTDEAKTIDVEASETSSEVSDEVDSADDVPEDVEDEEGDEDEGEEVEVEVEVEQTKNQTVDTVVKQKEVDDAKH PLQMMGIQLLMDSDQTNLSSKKSRRKSRMSFEDDSDEDWFPLDPFAAFKELRERKFFDIDDMYTIADVWGWTWEREIRNTCPRKWSPEWEVELAIKLTEK AMLQRLPT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04260		PDE324, PTAC3	PIGMENT DEFECTIVE 324, plastid...		Lus10003578 [exp]	0	1
AT3G48500		PDE312, PTAC10	PLASTID TRANSCRIPTIONALLY ACTI...		Lus10005031 [exp]	1.0	0.9754
AT5G26742		EMB1138	embryo defective 1138, DEAD bo...		Lus10001057 [exp]	2.0	0.9752
AT5G26742		EMB1138	embryo defective 1138, DEAD bo...		Lus10001425 [exp]	2.4	0.9681
AT4G16390		SVR7	suppressor of variegation 7, p...		Lus10039071 [exp]	2.8	0.9679
AT5G22640		EMB1211	embryo defective 1211, MORN (M...		Lus10020545 [exp]	3.2	0.9642
AT5G49030		OVA2	ovule abortion 2, tRNA synthet...		Lus10043413 [exp]	3.9	0.9458
AT3G03630		CS26	cysteine synthase 26 (.1)		Lus10020342 [exp]	4.9	0.9540
AT5G22640		EMB1211	embryo defective 1211, MORN (M...		Lus10009392 [exp]	5.2	0.9505
AT4G31850		PGR3	proton gradient regulation 3 (...		Lus10026884 [exp]	6.3	0.9504
AT5G15700			DNA/RNA polymerases superfamil...		Lus10035150 [exp]	6.9	0.9630

Compare expression of checked genes

Lus10003578 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.