Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28780 239 / 6e-74 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G04290 236 / 4e-73 ATLTL1, LTL1 Li-tolerant lipase 1 (.1) AT5G33370 234 / 2e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT5G18430 230 / 9e-71 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G50400 157 / 4e-43 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G23540 154 / 1e-41 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71250 146 / 6e-39 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G41890 143 / 7e-38 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G15720 139 / 2e-36 GLIP7 GDSL-motif lipase 7 (.1) AT5G08460 139 / 3e-36 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003106 [exp] 213 / 7e-64 AT3G04290 551 / 0.0 Li-tolerant lipase 1 (.1) Lus10011279 [exp] 217 / 1e-60 AT5G20960 1315 / 0.0 ARABIDOPSIS THALIANA ALDEHYDE OXIDASE 1, aldehyde oxidase alpha, aldehyde oxidase 1 (.1.2) Lus10004774 [exp] 165 / 2e-47 AT5G18430 311 / 3e-106 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016918 [exp] 156 / 2e-42 AT2G23540 381 / 6e-131 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10005236 [exp] 150 / 2e-40 AT2G23540 390 / 1e-134 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016775 [exp] 149 / 8e-40 AT2G23540 592 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10022471 [exp] 147 / 3e-39 AT2G23540 589 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10005238 [exp] 146 / 8e-39 AT2G23540 369 / 2e-126 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002773 [exp] 141 / 2e-37 AT5G45670 283 / 1e-93 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G024600 [exp] 256 / 1e-80 AT5G33370 568 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G024700 [exp] 249 / 5e-78 AT5G33370 549 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.002G253400 [exp] 248 / 2e-77 AT4G28780 558 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G024800 [exp] 244 / 1e-75 AT5G33370 544 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.013G051100 [exp] 239 / 7e-74 AT5G33370 563 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.013G051000 [exp] 237 / 4e-73 AT3G04290 543 / 0.0 Li-tolerant lipase 1 (.1) Potri.019G024400 [exp] 233 / 1e-71 AT3G04290 538 / 0.0 Li-tolerant lipase 1 (.1) Potri.017G130100 [exp] 150 / 1e-40 AT5G37690 526 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.008G104600 [exp] 148 / 8e-40 AT2G23540 370 / 3e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G064500 [exp] 139 / 1e-36 AT1G29670 527 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10003579 pacid=23165471 polypeptide=Lus10003579 locus=Lus10003579.g ID=Lus10003579.BGIv1.0 annot-version=v1.0 ATGTGGAACGGGACAGGTCAAAAAGTTGGGTTGGGGTACATACGGCCGTACTTGAGCCCAGAGCTCAACGGTGAATGGCTACTCAGAGGGGCTAGTTTCG CCTGTGCTGGAATCGGAATCTTCAATGCCACTGGTGTTCAGTATGGAAATTTAATAAGGATGTACCAGCAGTTCCTGTATTTCGAACAGTACCGCCGGAG GGTGACGGCGATGATCGGAGAGGAGGAGACTCGGGAATTAATAGAGGGCTCATTCTTTGTATTCTCCCTGGGGGGTAACGATTTCCTCAACTACTACAAC TACTTAGACGACGACCAAGACAACCGCTCACCGTCTGACTATCGCAGCCAGTTCGATGGCCGTCCGAATGAATTCGTTTCTTTGCTCCTCTCGGAGTACG AAAAGATCCTCATTAAAATGTACGATCTAGGAGGTCGGCGGATTCTGGTGAGGGGGACGGGACCGGTGGGTTGCTATCCAAAGGTTTTGGCCACCGCCGC GACAAAGAGGAAGAAGACAACGAGGGACGGTTGCGATGAGGAGTTGCAGTTGGTTCTGAGCACGTTCAACGCACGAGTATCTGAGATGATCACCCGAATG AACTCTGCTATTGGCACTAATGTCTTCATGAACATCAATACCTTTTCGTTGGCCACCGATTTGATAAAAAATCCCACGGCATATGCTCTAACCATCATGG TCCCCCCCGCCATGGCCGGCCTCATGACTTCGAGTTTGGTAGCCGGTGGCGGAAGAAGGGCCATCTTCGGGTTCGGCGATGCAGAATGTGACACTGGAAA CAACAATTACTTAGCCACCAAATATCGTGCTGACTACCCGCCTTATGGGATCGACTTTTATCCCTCCCGCCGCCCCATGGGGCACTTCTCTAATGGCCGC ATCCTCATTGACAGCATCAGTCAAAAAGTTGGGTTGGGGTACATACTGCCGTACTTGAGCCCAGAGCTTAGCGGTGAATGGCTATTTAGAGGAACTAGCT TTTGCTCTGCTGGAATTGGACTTCTGAATGCCACTGGTGTTCAGTTTGGAAGTTTAATAAGGATGTACCAGCAGTTCTTGTACTTCGAGCAGTACCGGCG ACGGGTGGTGGCTATGATCGGAGAGGAAGAAACCCAGTACTTCATAGAGAAATCATTGTTCATGGTCTCCATCGGCGGCATGGATTTCCTTAACTTCTAC TACTACCTAGATGACGAAGGCAACCGCTCACCGGCCGACTATCGCCGCCCGTTCGATGGCCTACCGAGTGAATTTGTCACTTTGCTCCTCTTGGAGTACA AGAAGATCCTCATAAGGATGTACAAGCTAGGCGGCCGGCGCATTCTGGTGAAGGGGACGGGTCCGGTGGGTTGCTACCCGAAAGTGTTGGCCGCCAACAG GAAGAGGAGGGACGACAGATGCGATGAGGAGCTGCAGACCGTCGTGGCTTCTTACAACGCACGGTTGGTTCAGCTGACCACCCAAATGAACGCCGATCTC GGCTCCGAAGTCTACATCTGCGCCAATGCCTTTTCCTCCGGCAATGATCTCGTCAGCAATCCTAGGGCATATGGTATAAAGTCATTCATTTAA
AA sequence Show only first row Show all	>Lus10003579 pacid=23165471 polypeptide=Lus10003579 locus=Lus10003579.g ID=Lus10003579.BGIv1.0 annot-version=v1.0 MWNGTGQKVGLGYIRPYLSPELNGEWLLRGASFACAGIGIFNATGVQYGNLIRMYQQFLYFEQYRRRVTAMIGEEETRELIEGSFFVFSLGGNDFLNYYN YLDDDQDNRSPSDYRSQFDGRPNEFVSLLLSEYEKILIKMYDLGGRRILVRGTGPVGCYPKVLATAATKRKKTTRDGCDEELQLVLSTFNARVSEMITRM NSAIGTNVFMNINTFSLATDLIKNPTAYALTIMVPPAMAGLMTSSLVAGGGRRAIFGFGDAECDTGNNNYLATKYRADYPPYGIDFYPSRRPMGHFSNGR ILIDSISQKVGLGYILPYLSPELSGEWLFRGTSFCSAGIGLLNATGVQFGSLIRMYQQFLYFEQYRRRVVAMIGEEETQYFIEKSLFMVSIGGMDFLNFY YYLDDEGNRSPADYRRPFDGLPSEFVTLLLLEYKKILIRMYKLGGRRILVKGTGPVGCYPKVLAANRKRRDDRCDEELQTVVASYNARLVQLTTQMNADL GSEVYICANAFSSGNDLVSNPRAYGIKSFI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04290		ATLTL1, LTL1	Li-tolerant lipase 1 (.1)		Lus10003579 [exp]	0	1

Compare expression of checked genes

Lus10003579 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.