Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70650 323 / 1e-107 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) AT1G55040 164 / 6e-45 zinc finger (Ran-binding) family protein (.1) AT1G48570 157 / 4e-44 zinc finger (Ran-binding) family protein (.1) AT5G17790 74 / 4e-14 VAR3 VARIEGATED 3, zinc finger (Ran-binding) family protein (.1) AT1G53460 54 / 8e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032790 [exp] 593 / 0 AT1G70650 428 / 2e-146 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Lus10009049 [exp] 185 / 2e-54 AT1G48570 365 / 7e-123 zinc finger (Ran-binding) family protein (.1) Lus10009681 [exp] 168 / 2e-48 AT1G48570 334 / 3e-111 zinc finger (Ran-binding) family protein (.1) Lus10015180 [exp] 129 / 2e-32 AT1G55040 614 / 0.0 zinc finger (Ran-binding) family protein (.1) Lus10031502 [exp] 110 / 3e-26 AT1G55040 421 / 5e-137 zinc finger (Ran-binding) family protein (.1) Lus10003872 [exp] 79 / 1e-15 AT5G17790 453 / 1e-148 VARIEGATED 3, zinc finger (Ran-binding) family protein (.1) Lus10013630 [exp] 77 / 6e-15 AT5G17790 338 / 4e-103 VARIEGATED 3, zinc finger (Ran-binding) family protein (.1) Lus10019433 [exp] 43 / 0.0001 AT2G26695 198 / 2e-65 Ran BP2/NZF zinc finger-like superfamily protein (.1) Lus10043289 [exp] 42 / 0.0002 AT2G26695 198 / 8e-66 Ran BP2/NZF zinc finger-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G107400 [exp] 407 / 1e-139 AT1G70650 449 / 4e-154 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Potri.015G038200 [exp] 182 / 2e-53 AT1G48570 335 / 4e-111 zinc finger (Ran-binding) family protein (.1) Potri.013G022300 [exp] 176 / 6e-49 AT1G55040 543 / 1e-179 zinc finger (Ran-binding) family protein (.1) Potri.012G046500 [exp] 165 / 7e-46 AT1G48570 338 / 3e-110 zinc finger (Ran-binding) family protein (.1) Potri.005G033000 [exp] 164 / 5e-45 AT1G55040 531 / 5e-177 zinc finger (Ran-binding) family protein (.1) Potri.013G067200 [exp] 99 / 3e-22 AT5G17790 466 / 6e-152 VARIEGATED 3, zinc finger (Ran-binding) family protein (.1) Potri.001G376900 [exp] 56 / 2e-08 AT1G53460 254 / 3e-83 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF00641 [flax] [poplar] zf-RanBP Zn-finger in Ran binding protein and others
Representative CDS sequence Show only first row Show all	>Lus10003580 pacid=23165476 polypeptide=Lus10003580 locus=Lus10003580.g ID=Lus10003580.BGIv1.0 annot-version=v1.0 ATGGATTTGATGGAATTGTTGGTTCGGAGAGGGTACTACGAGGCTGATGGAAATCCGTTTCAAAATGAGGAATTGGGGCCTAAAGACACAAACACCATCA GGACAGCATGCCTTCATTTCACGTGTGATCAGTTCGGACTTATAAGGTTCTTCTCAAAAGAAGATATCCAGAACATTTCGAAATTTGGCTGCCCAACCTT GGACAGGAAAGTTATCAACTCGGCAAAACGTCTTCGTGCCCATGTTGGTGTTGATGAAGGCAATGTTTGTAGCTCCTGTAACTTGAGGGGAGACTGTGAC AGGGCCTACATAAAGGCCCGGGAAGATGAAGGTGGGCGGATTTTGATGACTCACGGGCTTGATTTTGTTTCTGGTGCCGTGGTAAATAAGCCATGTCAAA GCAAATCAGTGAAAGAATCCGTTAGGAAGTTGCTGAAAGAAATGGCAGAATATGGTGGCCAGCAACTTGACTCTGATGGATCGCATAACACAATTTGTGA AACAAGAGCAACCGCGAGGCACAGTTCAAATTCAGAAGAAAAAGGCTCCCCAAAAGTTGCCATGAAGCAAGGCGACTGGCATTGCCCCAACTGCGAGTTC CTGAATTTTGCGAGAAACATCAAATGCTTGCGATGCAATGTTTTTTCTGAAGAAAAGCTTAAGCATTTGAGGGAAGATCGAGATCATCTTCCCTTAAGAA AGGCGATTGGCTATGTGTGCAATTTCTTGAACTTTGCCAAGAACACAAGATGTTTGCAATGCGAAGAAAGACCTCCGAATATGAATCCTGGAGAATGGGA ATGCGAGTCGTGCAATTACATAAACTTTAGGAGGAACATGGTATGCTTGAAATGTGATCATAGACGACCAAAGGCCTCGAATGCTTCGAGTACGCCTTCT AAGCTTGAACATGTTACTGTAGCCAATGCTGAAGATGGTGAATCAAGGTCTGTTAACAAAGACGATGACCAATGTCATGCATCCCCGTCTCAGGATCATT GTCAATTAGCGTCTGGACTTCCATTGAGGCTGTTCAACGGTGCTGAGAACTGTAGGGAAGAGTTGGAAATTCTCTAG
AA sequence Show only first row Show all	>Lus10003580 pacid=23165476 polypeptide=Lus10003580 locus=Lus10003580.g ID=Lus10003580.BGIv1.0 annot-version=v1.0 MDLMELLVRRGYYEADGNPFQNEELGPKDTNTIRTACLHFTCDQFGLIRFFSKEDIQNISKFGCPTLDRKVINSAKRLRAHVGVDEGNVCSSCNLRGDCD RAYIKAREDEGGRILMTHGLDFVSGAVVNKPCQSKSVKESVRKLLKEMAEYGGQQLDSDGSHNTICETRATARHSSNSEEKGSPKVAMKQGDWHCPNCEF LNFARNIKCLRCNVFSEEKLKHLREDRDHLPLRKAIGYVCNFLNFAKNTRCLQCEERPPNMNPGEWECESCNYINFRRNMVCLKCDHRRPKASNASSTPS KLEHVTVANAEDGESRSVNKDDDQCHASPSQDHCQLASGLPLRLFNGAENCREELEIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70650			Ran BP2/NZF zinc finger-like s...		Lus10003580 [exp]	0	1
AT4G11640		ATSR	serine racemase (.1)		Lus10008490 [exp]	3.0	0.9265
AT4G24740		AME1, AFC2	FUS3-complementing gene 2 (.1....		Lus10006230 [exp]	3.7	0.9297
AT5G24310		ABIL3	ABL interactor-like protein 3 ...		Lus10005919 [exp]	4.0	0.9291
AT1G19100			Histidine kinase-, DNA gyrase ...		Lus10039959 [exp]	8.8	0.9096
AT3G48470		EMB2423	embryo defective 2423 (.1)		Lus10001100 [exp]	8.9	0.8996
AT3G16230			Predicted eukaryotic LigT (.1....		Lus10006828 [exp]	9.7	0.9169
AT1G05410			Protein of unknown function (D...		Lus10010550 [exp]	10.6	0.9027
AT5G55100			SWAP (Suppressor-of-White-APri...		Lus10032646 [exp]	11.3	0.9171
AT1G79610		ATNHX6	Na+/H+ antiporter 6, ARABIDOPS...		Lus10039131 [exp]	16.2	0.9080
AT1G05620		NSH2, URH2	nucleoside hydrolase 2, uridin...		Lus10022062 [exp]	19.0	0.9137

Compare expression of checked genes

Lus10003580 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.