Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57230 264 / 5e-92 Thioredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G143500 [exp] 262 / 4e-91 AT5G57230 274 / 7e-96 Thioredoxin superfamily protein (.1) Potri.006G076300 [exp] 258 / 2e-89 AT5G57230 263 / 1e-91 Thioredoxin superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003582 pacid=23165474 polypeptide=Lus10003582 locus=Lus10003582.g ID=Lus10003582.BGIv1.0 annot-version=v1.0 ATGGACCAGCAGTCATTTTTCGACCGAATGCTCAGTCAGCTACGCTGCACATGCAAGTATTACACTGGACATCCAAAAGATCTTGGCCCGTCACGAGTTA TACATTTTACATCGGAACGCGAGTTTGTCAAGCTTCTGCATGAAGGTTACCCGGTGGCAGTCGCGTTTACCATCAGGAGTAATTACACTAAACATCTTGA CAAAGTGCTCGAGGAAGCTGCAGCTGAGTTTTCCCCTGGTGTCAAATTTATGAGGGTTGAATGTCCGAAATATCCAGGATTTTGTATAACACGGCAGAAA AAGGAGTATCCATTCATTGAAATCTTCCACAGTCCAGAACAAGCAGCTAACGAGGGAAAGGCTATCGACCCCGGTACCACCAGATACGCTGTTAAAGTTC TACCTTTCCACTACGATGTCAGTCCCTATGGATTCAGAGAGTTCTTCAAGCGCTACGGAATAGGACCGTTAAATCAAAAGGGAACGTCAGAATAA
AA sequence Show only first row Show all	>Lus10003582 pacid=23165474 polypeptide=Lus10003582 locus=Lus10003582.g ID=Lus10003582.BGIv1.0 annot-version=v1.0 MDQQSFFDRMLSQLRCTCKYYTGHPKDLGPSRVIHFTSEREFVKLLHEGYPVAVAFTIRSNYTKHLDKVLEEAAAEFSPGVKFMRVECPKYPGFCITRQK KEYPFIEIFHSPEQAANEGKAIDPGTTRYAVKVLPFHYDVSPYGFREFFKRYGIGPLNQKGTSE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57230			Thioredoxin superfamily protei...		Lus10003582 [exp]	0	1
AT1G68310		AE7	AS1/2 ENHANCER7, Protein of un...		Lus10031006 [exp]	1.4	0.9373
AT3G54170		ATFIP37	FKBP12 interacting protein 37 ...		Lus10027681 [exp]	1.7	0.9236
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10036870 [exp]	3.9	0.9120
AT2G26990		COP12, ATCSN2, ...	FUSCA 12, CONSTITUTIVE PHOTOMO...		Lus10041295 [exp]	4.0	0.9273
AT4G38980			unknown protein		Lus10035474 [exp]	4.0	0.9086
AT3G59990		MAP2B	methionine aminopeptidase 2B (...		Lus10010592 [exp]	5.7	0.8966
					Lus10015592 [exp]	7.7	0.8967
AT4G33100			unknown protein		Lus10033863 [exp]	10.8	0.8742
AT2G05630		ATG8D	Ubiquitin-like superfamily pro...		Lus10039656 [exp]	12.6	0.8931
AT3G63030		MBD4	methyl-CPG-binding domain 4 (....		Lus10042674 [exp]	13.7	0.9094

Compare expression of checked genes

Lus10003582 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.