Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04310 126 / 1e-34 unknown protein AT2G33250 43 / 0.0001 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032791 [exp] 490 / 2e-176 AT3G04310 133 / 4e-37 unknown protein Lus10004401 [exp] 81 / 4e-17 AT3G04310 81 / 3e-17 unknown protein Lus10023703 [exp] 71 / 2e-13 AT2G33250 74 / 1e-14 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G023400 [exp] 161 / 1e-47 AT3G04310 108 / 9e-28 unknown protein Potri.010G063300 [exp] 90 / 1e-20 AT3G04310 88 / 3e-20 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003583 pacid=23165478 polypeptide=Lus10003583 locus=Lus10003583.g ID=Lus10003583.BGIv1.0 annot-version=v1.0 ATGGGGAATTATCGGCGGCTTCTTCTTCTCCAGCCCCACTTCAATCAATCATCGCCGCTACTACCGTTGGTTTCCGTTCAATTCCCCGACGATTTCCGGC GTTCCGAGATTTCACCTCACTGCGGTGATCTCTTCCACTTCATCTGGCGGAAGAATAATTCGGTTACGAATTTGAGCTGGCGGCTGAGCTATAACTTCAG AGATGAGCAGCTCTTCACTGACGACGGCGGTGATCGGTACGACGGCTTCCGGTTCGGCGGAGCTTCGAAGAAGCGAGTCTGGTGGCTAGATGACGTTGAA GAATATGATTCCGATTCCGATTCGTGGGAGTTCGGTGGTTCAAGGAACGAGTTCCCGATTTTCAAGGTGATATCAGCTTTGGGTTGGATGGTTCCAGCCA TTGCAGTATCTATGCTAGTAGGAACAGACCAAAATGCATTGGTCATGGCATTAGCAGTTCCACTGGTACAGACTGCAGTTTCTGTTGTAGTTGATAAGCT TTGGGCATACGATAGGCCAAGAACCAAGTCCTGGGTCAGAACAAGGAGAAAGCCTTTCAATGGAGCTGGTTCTACTAGGACACAAACAAGAGAAAGAAAG GACCAAGAAGTGGAGAGCAGAACTGGAAATGGAAGTGGGAACGGCTACCAGTCCTGGGTTACATCAGACGATGGTTCGACCGATAGCAAGAGGGGTCCAA GGTTTGGCGGATGGGATGAGCTAGATAGAGAAGAAAGTGAAGCTCATCGGCCAAGGATGAATAAGAGTAGGAAGGCGGAATATGGGTCGAGGAAGCAAGG TAATAGAGTTAGGATGAGCAGGACGAGAAGAGTTAAGGATAGACCACTGTTGATTCGGCTGCTAGTTTCTGTTTTCCCTTTCATGTCATCGTGGTCTTCC TTCCTACTTTGA
AA sequence Show only first row Show all	>Lus10003583 pacid=23165478 polypeptide=Lus10003583 locus=Lus10003583.g ID=Lus10003583.BGIv1.0 annot-version=v1.0 MGNYRRLLLLQPHFNQSSPLLPLVSVQFPDDFRRSEISPHCGDLFHFIWRKNNSVTNLSWRLSYNFRDEQLFTDDGGDRYDGFRFGGASKKRVWWLDDVE EYDSDSDSWEFGGSRNEFPIFKVISALGWMVPAIAVSMLVGTDQNALVMALAVPLVQTAVSVVVDKLWAYDRPRTKSWVRTRRKPFNGAGSTRTQTRERK DQEVESRTGNGSGNGYQSWVTSDDGSTDSKRGPRFGGWDELDREESEAHRPRMNKSRKAEYGSRKQGNRVRMSRTRRVKDRPLLIRLLVSVFPFMSSWSS FLL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04310			unknown protein		Lus10003583 [exp]	0	1
AT5G07670			RNI-like superfamily protein (...		Lus10031164 [exp]	10.9	0.7884
AT2G39890		ATPROT1, ProT1	proline transporter 1 (.1.2)		Lus10009877 [exp]	13.2	0.8120
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Lus10030274 [exp]	13.5	0.8490
AT3G50440		ATMES10	ARABIDOPSIS THALIANA METHYL ES...		Lus10022467 [exp]	15.9	0.8276
AT4G01940		ATCNFU1, NFU1	NFU domain protein 1 (.1)		Lus10009999 [exp]	19.7	0.7865
AT3G16990			Haem oxygenase-like, multi-hel...		Lus10016885 [exp]	22.9	0.8364
AT5G52840			NADH-ubiquinone oxidoreductase...		Lus10038835 [exp]	23.4	0.8238
AT3G07870			F-box and associated interacti...		Lus10029527 [exp]	24.0	0.8150
AT1G11760		MED32	unknown protein		Lus10034758 [exp]	27.7	0.8127
AT5G64816			unknown protein		Lus10009081 [exp]	30.6	0.8268

Compare expression of checked genes

Lus10003583 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.