Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43590 241 / 3e-80 Chitinase family protein (.1) AT2G43610 233 / 4e-77 Chitinase family protein (.1) AT2G43620 226 / 3e-74 Chitinase family protein (.1) AT3G54420 224 / 2e-73 ATCHITIV, CHIV, ATEP3 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) AT2G43580 211 / 1e-68 Chitinase family protein (.1) AT2G43570 194 / 1e-61 CHI "chitinase, putative", chitinase, putative (.1) AT3G47540 167 / 4e-52 Chitinase family protein (.1.2) AT1G56680 163 / 2e-49 Chitinase family protein (.1) AT2G43600 152 / 2e-45 Chitinase family protein (.1) AT4G01700 139 / 2e-40 Chitinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032794 [exp] 366 / 3e-130 AT2G43590 265 / 6e-90 Chitinase family protein (.1) Lus10024368 [exp] 341 / 3e-120 AT2G43590 264 / 2e-89 Chitinase family protein (.1) Lus10010861 [exp] 337 / 2e-118 AT2G43590 263 / 6e-89 Chitinase family protein (.1) Lus10010862 [exp] 336 / 3e-118 AT2G43590 262 / 1e-88 Chitinase family protein (.1) Lus10035624 [exp] 268 / 5e-90 AT2G43590 246 / 5e-81 Chitinase family protein (.1) Lus10010866 [exp] 256 / 1e-86 AT3G54420 239 / 1e-79 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10024369 [exp] 253 / 2e-85 AT3G54420 230 / 6e-76 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10003227 [exp] 254 / 6e-85 AT2G43590 241 / 7e-79 Chitinase family protein (.1) Lus10003230 [exp] 250 / 2e-84 AT3G54420 240 / 8e-80 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G093900 [exp] 255 / 8e-86 AT3G54420 360 / 3e-126 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G094100 [exp] 253 / 5e-85 AT3G54420 350 / 3e-122 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G094000 [exp] 253 / 1e-84 AT3G54420 340 / 2e-118 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G093800 [exp] 250 / 9e-84 AT3G54420 369 / 8e-130 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.013G125100 [exp] 250 / 1e-83 AT3G54420 336 / 1e-116 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.013G125000 [exp] 227 / 8e-75 AT3G54420 421 / 1e-150 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G093700 [exp] 222 / 1e-72 AT3G54420 413 / 3e-147 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.002G186500 [exp] 156 / 7e-47 AT1G02360 413 / 2e-147 Chitinase family protein (.1) Potri.004G182000 [exp] 151 / 2e-44 AT3G12500 460 / 5e-164 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.014G111800 [exp] 149 / 5e-44 AT4G01700 422 / 1e-150 Chitinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0037 [flax] [poplar] Lysozyme PF00182 [flax] [poplar] Glyco_hydro_19 Chitinase class I
Representative CDS sequence Show only first row Show all	>Lus10003587 pacid=23165477 polypeptide=Lus10003587 locus=Lus10003587.g ID=Lus10003587.BGIv1.0 annot-version=v1.0 ATGGGAAAGCTTCAACTTCTCACGGTCGCCTTGGCCGTCTTTCTGGCCGCAGCATTCGCAGTTGATGCTGTTGCGGTGGGCAGCCTCGTCACTCCATCCT TCTTCAATGGCATTCTCAGCCAGGCCGGTTCCGGATGCAAGGGTAAGCACTTCTACAGACGTGATTCCTTCCTCGCTGCCGCAACTTCTTACCCTCGCTT CGGTCACCTCGACACCAACCTCATGTCCAAGCGCGAGATTGCTGCCTTCTTCGCCCATGTTACCCACGAAACTGGACATTTTTGCTATGTGGAAGAAATA GCTCGTGGGAAATACTGCTCGGCATCGAGCCAATACCCATGTGCTCCAGGGAAGAAATACTACGGCCGTGGGCCCATACAGCTAACGTGGAACTATAACT ACGGTGCGTGTGGAAAGGCTAACAATTTTGATGGACTCAAGAACCCTGACATTGTGGCTACGAATCCTACGATTGCGTGGAAAACGGGTTTGTGGTTCTG GATGAAGAATGTTCGCCCTGTAGTGGACAAAGGGTTTGGTGCTACCATTCGTCGCATTAATGGTGGAGAATGCAATGGCGGGAGTCCTAAAGCTGTGGCT GCTCGTGTCAAGTATTATAAAGCCTACTGCGCTGCTTTTGGAATCACTCCTGGCCCCAATCTCACTTGCTAG
AA sequence Show only first row Show all	>Lus10003587 pacid=23165477 polypeptide=Lus10003587 locus=Lus10003587.g ID=Lus10003587.BGIv1.0 annot-version=v1.0 MGKLQLLTVALAVFLAAAFAVDAVAVGSLVTPSFFNGILSQAGSGCKGKHFYRRDSFLAAATSYPRFGHLDTNLMSKREIAAFFAHVTHETGHFCYVEEI ARGKYCSASSQYPCAPGKKYYGRGPIQLTWNYNYGACGKANNFDGLKNPDIVATNPTIAWKTGLWFWMKNVRPVVDKGFGATIRRINGGECNGGSPKAVA ARVKYYKAYCAAFGITPGPNLTC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43590			Chitinase family protein (.1)		Lus10003587 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Lus10029921 [exp]	1.4	0.9869
AT3G07310			Protein of unknown function (D...		Lus10002342 [exp]	1.7	0.9894
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Lus10034042 [exp]	3.5	0.9849
					Lus10004280 [exp]	3.5	0.9853
AT4G14480			Protein kinase superfamily pro...		Lus10041162 [exp]	6.3	0.9784
AT5G54960		PDC2	pyruvate decarboxylase-2 (.1)		Lus10027820 [exp]	6.7	0.9729
AT5G19890			Peroxidase superfamily protein...		Lus10026748 [exp]	7.3	0.9484
					Lus10019232 [exp]	7.7	0.9773
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10014673 [exp]	8.0	0.9754
AT5G56350			Pyruvate kinase family protein...		Lus10003439 [exp]	9.2	0.9547

Compare expression of checked genes

Lus10003587 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.