Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33440 579 / 0 Pectin lyase-like superfamily protein (.1) AT4G23820 412 / 5e-141 Pectin lyase-like superfamily protein (.1) AT5G41870 407 / 5e-139 Pectin lyase-like superfamily protein (.1) AT3G62110 398 / 4e-135 Pectin lyase-like superfamily protein (.1) AT3G48950 383 / 4e-129 Pectin lyase-like superfamily protein (.1) AT4G23500 372 / 2e-124 Pectin lyase-like superfamily protein (.1) AT3G61490 365 / 2e-122 Pectin lyase-like superfamily protein (.1.2.3) AT2G23900 360 / 5e-120 Pectin lyase-like superfamily protein (.1) AT3G16850 354 / 3e-118 Pectin lyase-like superfamily protein (.1) AT1G19170 348 / 6e-115 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014799 [exp] 836 / 0 AT4G33440 630 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10038030 [exp] 407 / 1e-138 AT3G62110 632 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10003890 [exp] 398 / 3e-135 AT4G23820 657 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10032374 [exp] 397 / 6e-135 AT4G23820 656 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10023101 [exp] 378 / 2e-127 AT4G23820 642 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10007922 [exp] 374 / 1e-125 AT3G61490 743 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Lus10039279 [exp] 372 / 6e-125 AT3G48950 624 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10017517 [exp] 372 / 1e-124 AT4G23500 675 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10028766 [exp] 371 / 3e-124 AT3G61490 670 / 0.0 Pectin lyase-like superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G105800 [exp] 647 / 0 AT4G33440 642 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.005G063400 [exp] 641 / 0 AT4G33440 652 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G131700 [exp] 399 / 3e-135 AT3G61490 688 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Potri.001G100000 [exp] 398 / 6e-135 AT4G23500 701 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.014G112100 [exp] 397 / 7e-135 AT3G62110 649 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.002G186900 [exp] 395 / 5e-134 AT3G62110 666 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G139100 [exp] 393 / 2e-133 AT4G23820 660 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.017G145900 [exp] 389 / 6e-132 AT3G48950 659 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.002G162400 [exp] 378 / 2e-127 AT3G61490 734 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Potri.008G211500 [exp] 369 / 8e-124 AT3G16850 509 / 2e-179 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10003589 pacid=23163406 polypeptide=Lus10003589 locus=Lus10003589.g ID=Lus10003589.BGIv1.0 annot-version=v1.0 ATGATGACTGAAGAGAAACAGGGTTTCGGCGCTACTATCTTGAACGCGATGAAGCTCTCTCGTTCGTCGCTCCTTTTGTTGGCCACCGTTGCAGCACTTC TGTGCTTCCAGATCACAACTAGAACAGTGTACCCGATTTGGATCGCTAGGAACCGTGGATCCTTCGAGTCAGATATTCCACCCGATGCCGGAGGAAGCTG TTCCGGATTCTACGGCAAAATCCCTGCGAGAAAGACGGTGATGTCGATTAAGGATTTCGGAGGGATTGGCGACGGCGAAACGAGCAACACAAAAGCCTTT CAGGAAGCGATTCGGCATATGGAGCGGTTCGGGTCGGACGGCGGATCGCAGCTGAATGTGCCAGAGGGGAGGTGGCTCACTGGAAGCTTCAACCTCACCA GCAATTTCACCTTGTTTCTGGAAGCTGGCGCCGTGATTTTGGGTTCCCAGGACCCAACAGAATGGCCTATAATAAAGCCATTGCCTTCTTATGGAAGAGG AAGAGAGAGATTGGGAGGAAGACATATTAGCCTTATTCATGGGGATGGTCTCTTTGATGTCGTTATTACAGGACAAAATGGAACAATTGATGGTCAGGGG AAAATGTGGTGGGATTTGTGGTGGAATAGAACGTTGGAGCACACAAGAGGACACCTTGTTGAACTAATGAACTCTCGGAACATCCTTATCTCAAACCTCA CTCTTCACAACTCTCCGTTTTGGACTGTGCATCCAGTTTACTGCAGTAATGTTGTTATTAGAAACATGACGATCTTGGCGCCACTGAATGCTCCAAATAC GGATGGGATAGATCCAGACTCGAGCAGAAATGTGTGCATTGAGGACTGCTACATCGAGAGTGGAGATGATCTTGTTGCAGTAAAGAGTGGGTGGGACCAT TATGGTATAAAGATGGCCCGCCCAAGCTCTAACATTATAATTAGAAGAATCTCAGGCACCACTCCAACTTGCTCCGGTATCGGAATAGGTAGTGAAATGT CCGGAGGCATTTCCAACGTAACTATTGAGGATTTGCATGTCTGGAATTCGGCAGCTGGTGTGAGAATGAAAACAGATATTGGGAGGGGAGGATATATAGC AAATATTACTATAAGAAATGTAATCATGGAAGGAGTTAAGATACCTATAAAGTTCAGCAGGGGATCAAATGACCATCCTGATGAAGGGTGGGATCGCAAT GCCATTCCAACAGTGAAGGGAATCGTGATAAGTAATGTTGTCAGTTTGAATGCAGTTAAAGCTCCACAGCTGCTTGGCATTGAGAATGCTCCGTTTTCTG GGATATGCCTAAGGAATGTTACTTTGCTAGGCCTGAAGAAGTCCGGATCATGGCACTGTGAATTTCTCTCTGGTTTTGCTCAGGATGTTTTCCCATTGCC ATGTCCAGAGTTGCAGAAAGATGATGCGTCTGGGTGCCCCTAG
AA sequence Show only first row Show all	>Lus10003589 pacid=23163406 polypeptide=Lus10003589 locus=Lus10003589.g ID=Lus10003589.BGIv1.0 annot-version=v1.0 MMTEEKQGFGATILNAMKLSRSSLLLLATVAALLCFQITTRTVYPIWIARNRGSFESDIPPDAGGSCSGFYGKIPARKTVMSIKDFGGIGDGETSNTKAF QEAIRHMERFGSDGGSQLNVPEGRWLTGSFNLTSNFTLFLEAGAVILGSQDPTEWPIIKPLPSYGRGRERLGGRHISLIHGDGLFDVVITGQNGTIDGQG KMWWDLWWNRTLEHTRGHLVELMNSRNILISNLTLHNSPFWTVHPVYCSNVVIRNMTILAPLNAPNTDGIDPDSSRNVCIEDCYIESGDDLVAVKSGWDH YGIKMARPSSNIIIRRISGTTPTCSGIGIGSEMSGGISNVTIEDLHVWNSAAGVRMKTDIGRGGYIANITIRNVIMEGVKIPIKFSRGSNDHPDEGWDRN AIPTVKGIVISNVVSLNAVKAPQLLGIENAPFSGICLRNVTLLGLKKSGSWHCEFLSGFAQDVFPLPCPELQKDDASGCP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33440			Pectin lyase-like superfamily ...		Lus10003589 [exp]	0	1
AT5G67230		IRX14-L, I14H	IRREGULAR XYLEM 14-LIKE, IRREG...		Lus10010268 [exp]	2.8	0.9424
AT5G67230		IRX14-L, I14H	IRREGULAR XYLEM 14-LIKE, IRREG...		Lus10019325 [exp]	19.0	0.9183
AT5G67230		IRX14-L, I14H	IRREGULAR XYLEM 14-LIKE, IRREG...		Lus10011500 [exp]	20.0	0.9171
AT5G67230		IRX14-L, I14H	IRREGULAR XYLEM 14-LIKE, IRREG...		Lus10041601 [exp]	21.3	0.9170
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10007284 [exp]	21.8	0.8719
AT3G46440		UXS5	UDP-XYL synthase 5 (.1.2)		Lus10040847 [exp]	24.3	0.9085
AT3G23200			Uncharacterised protein family...		Lus10022188 [exp]	24.5	0.9152
AT3G46440		UXS5	UDP-XYL synthase 5 (.1.2)		Lus10005900 [exp]	25.1	0.9136
AT5G35960			Protein kinase family protein ...		Lus10008192 [exp]	25.4	0.8854
AT3G61750			Cytochrome b561/ferric reducta...		Lus10010120 [exp]	35.2	0.9140

Compare expression of checked genes

Lus10003589 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.