Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21705 420 / 6e-143 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G20710 277 / 2e-87 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G02150 249 / 2e-76 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G60770 238 / 1e-72 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G01990 237 / 6e-72 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02370 231 / 2e-69 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02820 231 / 3e-69 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G27460 221 / 7e-66 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G28020 189 / 3e-53 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G09450 166 / 2e-46 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005855 [exp] 432 / 9e-148 AT4G21705 503 / 5e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001213 [exp] 428 / 4e-146 AT4G21705 500 / 2e-174 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000091 [exp] 370 / 2e-124 AT4G21705 426 / 8e-147 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013047 [exp] 244 / 1e-74 AT1G60770 682 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016229 [exp] 233 / 1e-71 AT2G20710 269 / 7e-86 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10033698 [exp] 235 / 6e-71 AT2G20710 349 / 4e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10018588 [exp] 233 / 2e-70 AT2G20710 303 / 2e-97 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10024781 [exp] 229 / 1e-68 AT1G02150 599 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009787 [exp] 224 / 2e-66 AT1G02150 600 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G120900 [exp] 606 / 0 AT4G21705 483 / 8e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G042500 [exp] 464 / 4e-160 AT4G21705 608 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G051500 [exp] 460 / 1e-158 AT4G21705 605 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G133000 [exp] 298 / 8e-96 AT2G20710 310 / 1e-100 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G132500 [exp] 278 / 4e-88 AT2G20710 388 / 4e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.016G063300 [exp] 278 / 8e-88 AT2G20710 345 / 1e-113 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.016G063400 [exp] 274 / 5e-86 AT2G20710 349 / 3e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G132700 [exp] 273 / 8e-86 AT2G20710 387 / 2e-130 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.018G079600 [exp] 248 / 2e-76 AT1G60770 701 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G139400 [exp] 249 / 4e-76 AT1G02150 714 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10003590 pacid=23163409 polypeptide=Lus10003590 locus=Lus10003590.g ID=Lus10003590.BGIv1.0 annot-version=v1.0 ATGGCATCAACCTCTTTCTTCAAGATCCTGAAGAAGAAAACCCAAATCCTCCCAGCAAATCCTGTCTCGAATAGAAGTTTCTGCGTCAAATCGACGAGAG CCAGCAGCGATCTGTTTTCAAGAATCAGTCCTTTGGGAGACCCAGCTACTAGTTTAGCTCCAGTTCTTGATCAATGGGTTGAACAAGGTAACAAAATCAG AAATTTCGACCTTCATAGAGTTGTCAGACTGCTCCGCTCCTGCAAACGCTACAGCCAAGCCCTTGAGGTATCAGAGTGGACAGTAGGAAAACGGGTTGGC ACATTTTCGCAGTCTGACAGAGCAGTTCAGTTGGATCTAATCGGTAGAGTTAGGGGACTTGAATCTGCTGAGACTTACTTCACAAGCTTAGATGACAGGG AAAAAGTTGATAAACTCCACGGAGCTCTTCTAAATTGTTACGTTAGAGAAGGTCTAGTTGCAAAGTCCGTCTCTCATTGGGAGAATATGAAGGAGCTTGG TGTTGCTTTTACCGTCATTAATTTTAATGACATGATGTCCCTCTTCATCAAAACTGGCCTTCCGGAGAAAGTCCCTGGGTTACTAGCAGAGATGAAGGAG AATGGCATCTCCCCCGATATTGTCACTTACCGAATATGCATGAACGCTTATGCTGCAACATCGCAGCTTGATAAGGTTGAGAAGATGTTACAAGATGTGG AGGAACAGCCTTCCATTACAATGGATTGGTTGACTTATGCCACCGTAGCTAGTATTTACATAAAAGCTGGTTCAGAAGAGACAGCACTAAACTATTTGAA GAGATGTGAAACGAAAGTGAACGATGATGCAAATGGCTTCAACCATTTGATTTCCCTGCATGCTACTATTGGGAATAAAGATGAGGTATTGAGACTGTGG AGGGTTGCCAAAGCCAAGTGTAGGAAACAATTCAACAGGGATTATGTGACTGTGCTGGGTTCTTTAGTCAAGTTGGGAGATTTTGAAGCAGCTGAGAATT TTCTGGAGGAGTGGCATTTATCGTGTGAATTCTACGATTTTCGTGTTCCTAATACCATCTTAATTGGGTATTGCCAGAAGGGGTTAGTTGAAAAGGCTGA GTTGATGCTGCGTGACATGATTGGACGGGGGAAGGCTGCAATTCCTAACAGTTGGGCAATCATTGCAGCTGGGTATGTGGAGAAGCAGAACATGGAGAAA GCTTTTGATGCCATGACAGAAGCTCTAGCAGTTCATGAAAACAACAGAGGATGGAGACCGAAACCTCAGCTAATATCAAGCGTATTGAGGTGGGCCGGTG AGAATGCAGATGTTGAAAGAGTGGAAAGTTTTGTAAGCATGTTGCACAGTAAGATTCCCAAGGATGTAGAAATGTATAATGCACTTCTCAAGGTGAATAT GAGGAATGGGAAAGAAGTGGATAGGATTTTAGAGAGCATGAAGGCTGATGAAATTGATGAAGATGAGGAGACTGATAGAATTCTGAACTTAAAGTCTGCA ATTTGA
AA sequence Show only first row Show all	>Lus10003590 pacid=23163409 polypeptide=Lus10003590 locus=Lus10003590.g ID=Lus10003590.BGIv1.0 annot-version=v1.0 MASTSFFKILKKKTQILPANPVSNRSFCVKSTRASSDLFSRISPLGDPATSLAPVLDQWVEQGNKIRNFDLHRVVRLLRSCKRYSQALEVSEWTVGKRVG TFSQSDRAVQLDLIGRVRGLESAETYFTSLDDREKVDKLHGALLNCYVREGLVAKSVSHWENMKELGVAFTVINFNDMMSLFIKTGLPEKVPGLLAEMKE NGISPDIVTYRICMNAYAATSQLDKVEKMLQDVEEQPSITMDWLTYATVASIYIKAGSEETALNYLKRCETKVNDDANGFNHLISLHATIGNKDEVLRLW RVAKAKCRKQFNRDYVTVLGSLVKLGDFEAAENFLEEWHLSCEFYDFRVPNTILIGYCQKGLVEKAELMLRDMIGRGKAAIPNSWAIIAAGYVEKQNMEK AFDAMTEALAVHENNRGWRPKPQLISSVLRWAGENADVERVESFVSMLHSKIPKDVEMYNALLKVNMRNGKEVDRILESMKADEIDEDEETDRILNLKSA I

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21705			Tetratricopeptide repeat (TPR)...		Lus10003590 [exp]	0	1
AT3G56070		ROC2	rotamase cyclophilin 2 (.1.2)		Lus10042553 [exp]	2.0	0.8958
AT3G56070		ROC2	rotamase cyclophilin 2 (.1.2)		Lus10022012 [exp]	3.7	0.9105
AT2G34570		MEE21	maternal effect embryo arrest ...		Lus10001157 [exp]	5.2	0.9143
AT5G42150			Glutathione S-transferase fami...		Lus10017275 [exp]	6.2	0.8966
AT1G36280			L-Aspartase-like family protei...		Lus10040229 [exp]	8.0	0.8583
AT4G15820			unknown protein		Lus10043415 [exp]	10.2	0.8767
AT2G19385			zinc ion binding (.1)		Lus10011942 [exp]	15.0	0.8770
AT5G54580			RNA-binding (RRM/RBD/RNP motif...		Lus10003593 [exp]	19.0	0.8418
AT5G60990			DEA(D/H)-box RNA helicase fami...		Lus10031182 [exp]	21.9	0.8904
AT1G18800		NRP2	NAP1-related protein 2 (.1)		Lus10008620 [exp]	22.4	0.8727

Compare expression of checked genes

Lus10003590 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.