Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53800 200 / 2e-61 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014800 [exp] 235 / 9e-75 AT5G53800 196 / 1e-59 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G121000 [exp] 236 / 6e-76 AT5G53800 224 / 3e-71 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003591 pacid=23163407 polypeptide=Lus10003591 locus=Lus10003591.g ID=Lus10003591.BGIv1.0 annot-version=v1.0 ATGAGCCGCCGTCGAAACGATTCTCTCTCCGAGAGGGACGAGCTGGAAGAAGATAGAAAGTCCAAAGGCAAAGCTTGGCACGAGGGCGATTCTCCGGATG TCGGTGATCGGAAGATCGACGGGAGACGCAGAAGGAAACGATCCGTTGACAAACCGTCTGATTCAGGTTCCGGAGAAGAGAACGGTGGGAGAGACAGAAG AAAGAGAGAGTCGCGTAAGCGATGCAGCAGTAGAAGCTTGGAGTCGGATTCAGATAGTGAGGAGTCCGAGTCATCGGAGTCGGACTCAGAGCCGAGGAAG AGTGATAGTGAGAGCGAGGAGGTGAGGTTGAGGAGAAAGCGGAGGGAGAAGAGGAAGAGGAGGGAGCGGGAGGAAGAGAAGGAGAGGAAGAGGAGAAAAG AGAAGAAGAGAAGGAAGGAGAAAGATAAAGAGAGGGAGAAGCGGAATAAGAAAGAAAAGGATAAGAAAAAGAAGGAGAAAGCCGAGAGAGGGAAGAGAGG CGCCGTGACTGATTCCTGGGGGAAGTATGGGATCATCAGAGAAACTGATATGTGGAACAAGCGTCCTGAATTTAGTGCATGGTTAGCTGAAGTGAAACAG GTGAACCTTGAAACCATGTCTAATTGGGAGGAAAGGGAGAAGTTCAAGGATTTTATGGAGGACCATAACACAGCCACCTTTCCTTCCAAAAAGTATTACA ATCTTGATGCTTATTACAAGCGTCAACTATTGAAGGAAATCAAGAGCGGAAAGAAGGTCCAGGAAACTGAACGTACCGTATTCAATGATGAAGAATTGAA GAGGCAAGAGCTGAGACGGGAGCGAGAAAAACAGAAGGAACAGGAGGTGGAAGTGTTGAAACGGTCAATGCAGAGTGGAATGGCACAAGCAATGAAAGAC CAGGCCTTGCTTAGAGAAGAGATGGCATTGCAGTACAAGCTTGGAAATTACGAGGCTGCAGCAGCAATTCAGAGGAAGTTGGAGCCAGATCCTATTTAA
AA sequence Show only first row Show all	>Lus10003591 pacid=23163407 polypeptide=Lus10003591 locus=Lus10003591.g ID=Lus10003591.BGIv1.0 annot-version=v1.0 MSRRRNDSLSERDELEEDRKSKGKAWHEGDSPDVGDRKIDGRRRRKRSVDKPSDSGSGEENGGRDRRKRESRKRCSSRSLESDSDSEESESSESDSEPRK SDSESEEVRLRRKRREKRKRREREEEKERKRRKEKKRRKEKDKEREKRNKKEKDKKKKEKAERGKRGAVTDSWGKYGIIRETDMWNKRPEFSAWLAEVKQ VNLETMSNWEEREKFKDFMEDHNTATFPSKKYYNLDAYYKRQLLKEIKSGKKVQETERTVFNDEELKRQELRREREKQKEQEVEVLKRSMQSGMAQAMKD QALLREEMALQYKLGNYEAAAAIQRKLEPDPI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53800			unknown protein		Lus10003591 [exp]	0	1
AT5G46840			RNA-binding (RRM/RBD/RNP motif...		Lus10000904 [exp]	1.4	0.9456
AT5G62270			unknown protein		Lus10035022 [exp]	2.8	0.9201
AT5G14440			Surfeit locus protein 2 (SURF2...		Lus10022288 [exp]	4.5	0.9110
AT3G02790	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10036432 [exp]	4.6	0.9161
AT5G63910		FCLY	farnesylcysteine lyase (.1)		Lus10031378 [exp]	5.3	0.9083
AT1G77180		SKIP	chromatin protein family (.1.2...		Lus10027158 [exp]	7.5	0.8947
AT3G60540			Preprotein translocase Sec, Se...		Lus10037570 [exp]	8.9	0.9013
AT3G13780			SMAD/FHA domain-containing pro...		Lus10037628 [exp]	10.4	0.8856
AT5G67590		FRO1	FROSTBITE1, NADH-ubiquinone ox...		Lus10019261 [exp]	10.7	0.9109
AT5G49210			unknown protein		Lus10032604 [exp]	11.3	0.9043

Compare expression of checked genes

Lus10003591 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.