Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54580 154 / 5e-46 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G37510 103 / 7e-27 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G73530 98 / 4e-24 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G06210 79 / 9e-18 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT1G18630 79 / 2e-17 GR-RBP6 glycine-rich RNA-binding protein 6 (.1) AT3G46020 72 / 9e-16 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G20930 77 / 2e-15 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G61030 76 / 3e-15 GR-RBP3 glycine-rich RNA-binding protein 3 (.1) AT4G39260 70 / 7e-15 ATGRP8, CCR1, GR-RBP8 glycine-rich RNA-binding protein 8, GLYCINE-RICH PROTEIN 8, cold, circadian rhythm, and RNA binding 1 (.1.2.3.4) AT3G26420 72 / 2e-14 ATRZ-1A RZ-1A, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014802 [exp] 461 / 2e-163 AT5G54580 176 / 2e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10003980 [exp] 110 / 3e-29 AT2G37510 169 / 1e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10023758 [exp] 107 / 6e-28 AT2G37510 164 / 9e-53 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10029426 [exp] 82 / 5e-17 AT5G27720 190 / 2e-58 SM-like protein 4, embryo defective 1644, Small nuclear ribonucleoprotein family protein (.1) Lus10027035 [exp] 81 / 1e-16 AT3G20930 360 / 8e-123 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10022551 [exp] 75 / 5e-16 AT4G13850 167 / 7e-54 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10026364 [exp] 75 / 7e-16 AT1G73530 112 / 6e-32 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10017852 [exp] 76 / 1e-15 AT5G61030 178 / 7e-55 glycine-rich RNA-binding protein 3 (.1) Lus10016639 [exp] 74 / 1e-15 AT4G13850 166 / 1e-53 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G130300 [exp] 168 / 2e-51 AT5G54580 161 / 2e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G409800 [exp] 167 / 4e-51 AT5G54580 174 / 2e-56 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.012G038200 [exp] 98 / 2e-24 AT1G73530 141 / 6e-43 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G208500 [exp] 82 / 5e-19 AT5G06210 160 / 1e-51 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G319900 [exp] 81 / 2e-18 AT4G13850 140 / 1e-43 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.012G061600 [exp] 83 / 4e-18 AT5G61030 181 / 9e-56 glycine-rich RNA-binding protein 3 (.1) Potri.008G022280 [exp] 79 / 2e-17 AT3G20930 203 / 2e-65 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.015G057400 [exp] 81 / 3e-17 AT5G61030 157 / 8e-47 glycine-rich RNA-binding protein 3 (.1) Potri.010G237200 [exp] 81 / 1e-16 AT3G20930 429 / 5e-150 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.017G059000 [exp] 76 / 1e-16 AT4G13850 134 / 9e-42 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10003593 pacid=23163401 polypeptide=Lus10003593 locus=Lus10003593.g ID=Lus10003593.BGIv1.0 annot-version=v1.0 ATGGCTTTGAGATCAATGTCTTCGGCTCTCACCGCGGGTGCCAGCAGCTTACGGAGGCTGTTGTCCACCACGTCTTCCTCTTCATCCATCTTCTCACCTT CCTCTACGCCCGCCCCTTCAGCTCGTGAACAAGCTGATCCCAACGTCAACCTCTTCGTCTCCGGTCTTAGCAAAAGAACCACAACAGAGGCTCTTAAGGA AGCCTTTGGGCAGTTTGGTGAAGTGGTTCACGCTAAAGTTGTCACAGATAGGGTATCTGGATATTCCAAAGGCTTTGGCTTTGTTAAGTATGCAACCTTG GAGGATGCTGCAAAAGCAATAGAAGGCATGGATGGAAAGTTTTTGGATGGTTGGGTTATATTTGCTGAATATGCAAGACCAAGAGCACCTCCTACATTTC CCAGTAACATGGGGCCTGTCAGTGGGAGTTATGGTTCCATAAATGGGAACAACGCTAGCTACGATTCTCGTGGTAATGTGACCCCTGGTTATGGAACTGC CAATGGATATGGTGGGAACAGTGCAAATCAAGGTTATGGGAATTTTGCAGGCTCTTCCTCGTATGGTCTTAACGCTGCCTTGTCACCTGGAAATGATACA GGATCTTCATATGGGAGACATAATGCTCCTCCTCCGTATGGAAATAATTCCTATACTTATGGCAACAACCCTTCAGTGGGCAGTTCAGGTTTTGGTAACC AGAACAGTGGCTTTGCATATGGTAATGCCCCAACTCCAGCATATGGCAATAACTCAGGTTCTTCTGCATATGGGACAAACTCAGCATTTGGTAGTTCAGA TCCCGCAGCTCAACAGTATAGTGGCCCTGCAAATGTGAACACGGCGAGTCCTGGTTATGGGGCCAGCTCAGGCACAGCATATGGAAATAACTCTGGCGTT GGAGGTTTGGGTTCTGTAGATCATGGAAACAATGGCCCTACATATTCAAACACCCAAAGTCCTGGACGTGGTGACAACACTAGCTCTGCATTTGCAAACG GCACAAATTCTTCATATGATAACTCGGCCAGGTTTGGGTATGGTAATCGTCAGTGA
AA sequence Show only first row Show all	>Lus10003593 pacid=23163401 polypeptide=Lus10003593 locus=Lus10003593.g ID=Lus10003593.BGIv1.0 annot-version=v1.0 MALRSMSSALTAGASSLRRLLSTTSSSSSIFSPSSTPAPSAREQADPNVNLFVSGLSKRTTTEALKEAFGQFGEVVHAKVVTDRVSGYSKGFGFVKYATL EDAAKAIEGMDGKFLDGWVIFAEYARPRAPPTFPSNMGPVSGSYGSINGNNASYDSRGNVTPGYGTANGYGGNSANQGYGNFAGSSSYGLNAALSPGNDT GSSYGRHNAPPPYGNNSYTYGNNPSVGSSGFGNQNSGFAYGNAPTPAYGNNSGSSAYGTNSAFGSSDPAAQQYSGPANVNTASPGYGASSGTAYGNNSGV GGLGSVDHGNNGPTYSNTQSPGRGDNTSSAFANGTNSSYDNSARFGYGNRQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54580			RNA-binding (RRM/RBD/RNP motif...		Lus10003593 [exp]	0	1
AT5G54580			RNA-binding (RRM/RBD/RNP motif...		Lus10014802 [exp]	2.6	0.8414
AT2G42710			Ribosomal protein L1p/L10e fam...		Lus10015809 [exp]	3.6	0.8211
AT2G34570		MEE21	maternal effect embryo arrest ...		Lus10001157 [exp]	5.6	0.9075
AT1G14810			semialdehyde dehydrogenase fam...		Lus10030759 [exp]	9.8	0.8506
AT5G02050			Mitochondrial glycoprotein fam...		Lus10012653 [exp]	12.0	0.7591
AT4G15820			unknown protein		Lus10043415 [exp]	14.5	0.8424
AT5G13680		AtELP1, ELO2, A...	ELONGATA 2, ABA-OVERLY SENSITI...		Lus10023427 [exp]	18.5	0.8424
AT4G21705			Tetratricopeptide repeat (TPR)...		Lus10003590 [exp]	19.0	0.8418
AT3G63400			Cyclophilin-like peptidyl-prol...		Lus10018746 [exp]	19.5	0.8625
AT1G64600			methyltransferases;copper ion ...		Lus10003205 [exp]	21.7	0.8407

Compare expression of checked genes

Lus10003593 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.