Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54540 102 / 7e-25 Uncharacterised conserved protein (UCP012943) (.1) AT4G25170 45 / 3e-05 Uncharacterised conserved protein (UCP012943) (.1), Uncharacterised conserved protein (UCP012943) (.2) AT5G61490 44 / 8e-05 Uncharacterised conserved protein (UCP012943) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014803 [exp] 504 / 0 AT5G54540 139 / 8e-39 Uncharacterised conserved protein (UCP012943) (.1) Lus10009018 [exp] 51 / 6e-07 AT5G61510 513 / 1e-178 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10009654 [exp] 45 / 4e-05 AT4G25170 174 / 1e-51 Uncharacterised conserved protein (UCP012943) (.1), Uncharacterised conserved protein (UCP012943) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G130000 [exp] 192 / 7e-59 AT5G54540 111 / 3e-28 Uncharacterised conserved protein (UCP012943) (.1) Potri.001G410100 [exp] 188 / 3e-57 AT5G54540 121 / 4e-32 Uncharacterised conserved protein (UCP012943) (.1) Potri.003G107400 [exp] 47 / 9e-06 AT4G25170 190 / 1e-57 Uncharacterised conserved protein (UCP012943) (.1), Uncharacterised conserved protein (UCP012943) (.2) Potri.001G126300 [exp] 44 / 0.0001 AT4G25170 184 / 3e-55 Uncharacterised conserved protein (UCP012943) (.1), Uncharacterised conserved protein (UCP012943) (.2) Potri.014G057200 [exp] 42 / 0.0002 AT5G61490 86 / 1e-19 Uncharacterised conserved protein (UCP012943) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003594 pacid=23163405 polypeptide=Lus10003594 locus=Lus10003594.g ID=Lus10003594.BGIv1.0 annot-version=v1.0 ATGGGAGGAGGAGCAGCCATGAGAACGGTGGCCAAGGTCGCCGGTATCGGTGTTGTCAACAGTGGATTCCGCGGTGCCGCCTCCGGATTGCCTTCTGCTG AACACTCTGTGCGCAACGCATCACGCCCCGTGTCAGCCATGATCTCTTCATCGCCATCGGCGTCCTCTGGTACGGGTGCGGTTCAGCGCCCTGTACGGGA GCTCGATCAGTGGGAGTTTGCTGGCGGTGAGGAAGAGGAGTTGATGCTGTTGGAATCTGCTGAACCGAAGCCCAGGCTTGTATTTGGCCCTCCCCCTACT CATCAGGAGGCTAAAGAAGCTACCTTCGAGTTGAAGGGCGCCCTTGAGAAAATATCTTTTGAGAATCCTACTCATGGAGTACCTACTGCTTCAGTTGGAT TTGCTGACCGTCATGATCTCCCTGTGCTTACAACTTCTGAACTCCTGGGGAGTACAAGTTGCATTACACCACCAACTAGTGTGTCGGGAAATGCCGTACG GGCGTTTAAGTTGCTCAATGAGAGCCCTGCTGCTCAGTCGGTAGTTGCTTCAATTGCCGCGGACCCAAACGTGTGGCATGCTGTTATGAACAATGATGCA CTTACTGAATTCCTCCAGTCCCACAAGCCAGTTACAAGTGCTCTCAGCGAGGAGACAACAGAATCATTTGCAAATTCGAATTCTGAGGACCCAAAATCTC CAAAGCTGCCAGAGGCATTACAAGACGCGTGGGAGTTCCAGAAGTCAAAGACTGGGTTTATGGATATACTGGAGGACATCAAAGTTAGCGTGGTGGATAT GTTCGGCACAGTATCTTCTTATCTGCAGAACATGTTTGGAAAGTCGTCCGCTGGCGCTGTTGATGAATCTGAAGCCACCGGTGAGAGTAGCGGGAAATCA TCAGCATTCCTGGAGAATTCGATGGGAGCATCTTTCATGGCATTAGCTGTGATGGCCATCATGATGGTGGTGCTGAAACGCTAG
AA sequence Show only first row Show all	>Lus10003594 pacid=23163405 polypeptide=Lus10003594 locus=Lus10003594.g ID=Lus10003594.BGIv1.0 annot-version=v1.0 MGGGAAMRTVAKVAGIGVVNSGFRGAASGLPSAEHSVRNASRPVSAMISSSPSASSGTGAVQRPVRELDQWEFAGGEEEELMLLESAEPKPRLVFGPPPT HQEAKEATFELKGALEKISFENPTHGVPTASVGFADRHDLPVLTTSELLGSTSCITPPTSVSGNAVRAFKLLNESPAAQSVVASIAADPNVWHAVMNNDA LTEFLQSHKPVTSALSEETTESFANSNSEDPKSPKLPEALQDAWEFQKSKTGFMDILEDIKVSVVDMFGTVSSYLQNMFGKSSAGAVDESEATGESSGKS SAFLENSMGASFMALAVMAIMMVVLKR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54540			Uncharacterised conserved prot...		Lus10003594 [exp]	0	1
AT3G09880		ATB' BETA, ATB'...	Protein phosphatase 2A regulat...		Lus10021511 [exp]	1.0	0.9214
AT2G15695			Protein of unknown function DU...		Lus10019874 [exp]	2.4	0.9009
AT1G08570		ACHT4	atypical CYS HIS rich thiored...		Lus10026878 [exp]	5.3	0.8622
AT2G46940			unknown protein		Lus10009965 [exp]	6.6	0.8560
AT2G47970			Nuclear pore localisation prot...		Lus10027618 [exp]	6.8	0.8293
AT5G13570		TDT, DCP2, ATDC...	TRIDENT, decapping 2 (.1.2)		Lus10040400 [exp]	6.9	0.8554
AT1G80920		AtToc12, AtJ8, ...	translocon at the outer envelo...		Lus10041671 [exp]	7.7	0.8677
AT3G15358			unknown protein		Lus10011176 [exp]	7.7	0.8637
AT1G08570		ACHT4	atypical CYS HIS rich thiored...		Lus10003437 [exp]	9.7	0.8333
AT1G03350			BSD domain-containing protein ...		Lus10012761 [exp]	10.4	0.8608

Compare expression of checked genes

Lus10003594 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.