Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54510 981 / 0 DFL1, GH3.6 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) AT4G27260 964 / 0 GH3.5, WES1 Auxin-responsive GH3 family protein (.1) AT4G37390 786 / 0 AUR3, YDK1, GH3-2, BRU6 YADOKARI 1, AUXIN UPREGULATED 3, Auxin-responsive GH3 family protein (.1) AT2G23170 782 / 0 GH3.3 Auxin-responsive GH3 family protein (.1) AT2G14960 781 / 0 GH3.1 Auxin-responsive GH3 family protein (.1) AT1G59500 738 / 0 GH3.4 Auxin-responsive GH3 family protein (.1) AT1G28130 687 / 0 GH3.17 Auxin-responsive GH3 family protein (.1.2) AT2G47750 629 / 0 GH3.9 putative indole-3-acetic acid-amido synthetase GH3.9 (.1) AT1G23160 575 / 0 Auxin-responsive GH3 family protein (.1) AT5G13370 563 / 0 Auxin-responsive GH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014804 [exp] 1187 / 0 AT5G54510 977 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10018510 [exp] 822 / 0 AT5G54510 859 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10039723 [exp] 805 / 0 AT5G54510 855 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10013887 [exp] 762 / 0 AT2G14960 949 / 0.0 Auxin-responsive GH3 family protein (.1) Lus10026600 [exp] 761 / 0 AT2G14960 950 / 0.0 Auxin-responsive GH3 family protein (.1) Lus10010391 [exp] 752 / 0 AT4G37390 904 / 0.0 YADOKARI 1, AUXIN UPREGULATED 3, Auxin-responsive GH3 family protein (.1) Lus10014869 [exp] 707 / 0 AT4G37390 858 / 0.0 YADOKARI 1, AUXIN UPREGULATED 3, Auxin-responsive GH3 family protein (.1) Lus10005151 [exp] 405 / 1e-134 AT2G46370 784 / 0.0 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4) Lus10003039 [exp] 396 / 6e-131 AT2G46370 784 / 0.0 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G410400 [exp] 1005 / 0 AT5G54510 1109 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Potri.011G129700 [exp] 1004 / 0 AT5G54510 1088 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Potri.013G151100 [exp] 943 / 0 AT5G54510 1014 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Potri.009G092900 [exp] 816 / 0 AT2G14960 1014 / 0.0 Auxin-responsive GH3 family protein (.1) Potri.001G298300 [exp] 807 / 0 AT2G14960 1016 / 0.0 Auxin-responsive GH3 family protein (.1) Potri.007G050300 [exp] 783 / 0 AT2G14960 959 / 0.0 Auxin-responsive GH3 family protein (.1) Potri.001G069000 [exp] 674 / 0 AT1G28130 901 / 0.0 Auxin-responsive GH3 family protein (.1.2) Potri.003G161300 [exp] 667 / 0 AT1G28130 910 / 0.0 Auxin-responsive GH3 family protein (.1.2) Potri.002G206400 [exp] 655 / 0 AT2G47750 865 / 0.0 putative indole-3-acetic acid-amido synthetase GH3.9 (.1) Potri.014G095500 [exp] 395 / 1e-130 AT2G46370 790 / 0.0 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF03321 [flax] [poplar] GH3 GH3 auxin-responsive promoter
Representative CDS sequence Show only first row Show all	>Lus10003598 pacid=23163403 polypeptide=Lus10003598 locus=Lus10003598.g ID=Lus10003598.BGIv1.0 annot-version=v1.0 ATGCCAGAAGCTCCCACCACCAACTCCAATCTTATCAATGGAGGAGGAGCACCTCCATCATCCACTGTGATGATCAACATTGCTGAAAAGACCAGAACAA TCCTTGATTTCGTCGAGGATGTTACTACCAACCCGGACGACGCCCAAACAAACGCCCTCCACAACATCCTTTCCCAAAACTCAGAGGTTGAATACCTCAA CCGTCACCGCCTCAATGGCGCCACCGACCGTCGAACTTTCAAGAAACTCGTCCCTGTCATCTCCTACGCAGACATCTCCCCTGACATCACCCGCATCGCC AATGGCGATTCCTCCCCTATCTTCTGCTCTCTCCCTATCTCCGAATTCCTCACCAGCTCTGGTACATCAGCAGGGGAAAGGAAATTGATGCCGACAATCG AGCAAGAGATGGAGAGGAGGTCACAGCTTTACAGCCTGTTAATGCCTGTGATGAGCCAGTTCGTTCCTGACTTGGATCAAGGTAAAGGCATGTATTTCCT CTTCATTAAGTCAGAGGCCAAAACCCCTGGCGGACTATTTGCTCGTCCTGTTCTTACCAGCTATTACAAAAGCTCTCATTTCCAAAATCGACCCTTTGAT CCTTACACAAACTACACCAGCCCAAACGAGACCATCCTTTGCCCTGATTCTTACCAATCCATGTACTCTCAACTCCTCTGCGGACTCTGCCAACGCACCG AGGTCCTCCGGGTCGGGGCAGTGTTCGCATACGGATTCATCCGGGCCATCCAGTTCCTTCAGAAGCACTGGCAGCTGCTGTCACACGATATCCGGACGGG TACTCTTGACCCGAGGATCACTGACCCGGGTGTGAGGGAGGCGGTGATGAACAAAGTCCTGAGACGACCAGATCCGGAACTGGCGGGTTTTGTTGAAAAG GAATGCGGGAAGGAATCGTGGCAGGGAGTGATTACTAGGCTGTGGCCCAATACTAAGTACGTGGATGTTATTGTGACGGGTACAATGTCGCAGTACATCC CGATTCTGGACTATTACAGCAATGGATTGCCTCTTGTCTGCACTATGTACGCTTCCTCCGAATGCTATTTCGGGGTCAATTTGAACCCGCTCTGTAAACC CTCTGATGTCGCCTACACCCTCATTCCCACCATGGCCTACTTCGAGTTCTTGCCCTTCCACCGCAACAACCTCGTCGTCAACAACGAGGAGAAGCAGCAG CTTGTTGACCTCGCAGATGTCAAGCTCGGCCAGGAATACGAGCTTGTTGTCACCACTTACGCTGGGCTGTACCGATACAGAGTGGGGGATGTGCTGAGAG TGGCAGGGTTCAAGAACAATGCGCCGCAATTCAACTTCATATGCAGGAAGAACGTAATGCTGAGCATAGACGCGGACAAGACGGACGAGGTGGAGCTGCA GAACGCAGTGAAGAATGCGGAGAATCATTTGGTGCCGTTCGATGCGAACGTGGCGGAGTACACTAGCTATGGGGACACAGCCACAATTCCGGGTCACTAT GTGCTGTATTGGGAGCTGAGCTTGAATGGGAAAACCTCAATTCCGCCTTCAGTGTTCGAGGACTGCTGCCTGACCATGGAGGAATCGCTCAACAGTGTGT ACAGGCAGTGCAGGGTGGCCGATAAGTCCATCGGCCCGCTGGAGATTAAGATTGTGGAGGTGGGTACATTCGATAAGCTGATGGACTATGCAATTAGCCG CGGGGCGTCAATTAACCAGTACAAGACGCCGAGGTGCGTGAAAATAGCGCCAATTATTGAGCTGTTGAACGCGAGGGTTGTGTCCAGTTATTTCAGCCCA AAGTGCCCCAAATGGGTTCCTGGTCACAAGCAATGGAACAACAAGGGCAATAATAATATATGA
AA sequence Show only first row Show all	>Lus10003598 pacid=23163403 polypeptide=Lus10003598 locus=Lus10003598.g ID=Lus10003598.BGIv1.0 annot-version=v1.0 MPEAPTTNSNLINGGGAPPSSTVMINIAEKTRTILDFVEDVTTNPDDAQTNALHNILSQNSEVEYLNRHRLNGATDRRTFKKLVPVISYADISPDITRIA NGDSSPIFCSLPISEFLTSSGTSAGERKLMPTIEQEMERRSQLYSLLMPVMSQFVPDLDQGKGMYFLFIKSEAKTPGGLFARPVLTSYYKSSHFQNRPFD PYTNYTSPNETILCPDSYQSMYSQLLCGLCQRTEVLRVGAVFAYGFIRAIQFLQKHWQLLSHDIRTGTLDPRITDPGVREAVMNKVLRRPDPELAGFVEK ECGKESWQGVITRLWPNTKYVDVIVTGTMSQYIPILDYYSNGLPLVCTMYASSECYFGVNLNPLCKPSDVAYTLIPTMAYFEFLPFHRNNLVVNNEEKQQ LVDLADVKLGQEYELVVTTYAGLYRYRVGDVLRVAGFKNNAPQFNFICRKNVMLSIDADKTDEVELQNAVKNAENHLVPFDANVAEYTSYGDTATIPGHY VLYWELSLNGKTSIPPSVFEDCCLTMEESLNSVYRQCRVADKSIGPLEIKIVEVGTFDKLMDYAISRGASINQYKTPRCVKIAPIIELLNARVVSSYFSP KCPKWVPGHKQWNNKGNNNI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54510		DFL1, GH3.6	DWARF IN LIGHT 1, Auxin-respon...		Lus10003598 [exp]	0	1
AT5G65890		ACR1	ACT domain repeat 1 (.1.2)		Lus10011715 [exp]	1.0	0.8792
AT5G08350			GRAM domain-containing protein...		Lus10010167 [exp]	3.5	0.8207
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10021828 [exp]	8.4	0.7885
AT3G54570			Plant calmodulin-binding prote...		Lus10024175 [exp]	11.1	0.8397
AT5G02230			Haloacid dehalogenase-like hyd...		Lus10010848 [exp]	12.0	0.7821
AT4G11670			Protein of unknown function (D...		Lus10029581 [exp]	12.2	0.8234
AT3G62980		AtTIR1, TIR1	TRANSPORT INHIBITOR RESPONSE 1...		Lus10020086 [exp]	13.9	0.7926
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Lus10011718 [exp]	17.3	0.7617
AT5G08350			GRAM domain-containing protein...		Lus10013445 [exp]	18.6	0.7832
AT3G61060		ATPP2-A13	phloem protein 2-A13 (.1.2)		Lus10005769 [exp]	20.6	0.8324

Compare expression of checked genes

Lus10003598 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.