Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02260 636 / 0 AT-RSH1, RSH1, ATRSH1 RELA-SPOT HOMOLOG 1, RELA/SPOT homolog 1 (.1.2.3) AT1G54130 195 / 1e-54 AT-RSH3, RSH3, ATRSH3 RELA/SPOT homolog 3 (.1) AT3G14050 193 / 7e-54 AT-RSH2, RSH2, ATRSH2 RELA-SPOT HOMOLOG 2, RELA/SPOT homolog 2 (.1) AT3G17470 114 / 6e-27 ATCRSH Ca2+-activated RelA/spot homolog, Ca2+-activated RelA/spot homolog (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022102 [exp] 190 / 1e-53 AT1G54130 801 / 0.0 RELA/SPOT homolog 3 (.1) Lus10037672 [exp] 189 / 2e-52 AT1G54130 891 / 0.0 RELA/SPOT homolog 3 (.1) Lus10001862 [exp] 185 / 1e-50 AT1G54130 867 / 0.0 RELA/SPOT homolog 3 (.1) Lus10015656 [exp] 185 / 1e-50 AT1G54130 895 / 0.0 RELA/SPOT homolog 3 (.1) Lus10002139 [exp] 138 / 2e-34 AT1G54130 167 / 7e-43 RELA/SPOT homolog 3 (.1) Lus10028191 [exp] 106 / 3e-24 AT3G17470 671 / 0.0 Ca2+-activated RelA/spot homolog, Ca2+-activated RelA/spot homolog (.1) Lus10008755 [exp] 73 / 1e-13 AT1G54130 72 / 1e-13 RELA/SPOT homolog 3 (.1) Lus10042894 [exp] 66 / 5e-11 AT3G17470 350 / 6e-114 Ca2+-activated RelA/spot homolog, Ca2+-activated RelA/spot homolog (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G126700 [exp] 712 / 0 AT4G02260 1305 / 0.0 RELA-SPOT HOMOLOG 1, RELA/SPOT homolog 1 (.1.2.3) Potri.001G168200 [exp] 196 / 1e-54 AT1G54130 953 / 0.0 RELA/SPOT homolog 3 (.1) Potri.003G066000 [exp] 194 / 3e-54 AT1G54130 901 / 0.0 RELA/SPOT homolog 3 (.1) Potri.013G089000 [exp] 166 / 9e-44 AT1G54130 164 / 8e-42 RELA/SPOT homolog 3 (.1) Potri.010G002400 [exp] 117 / 5e-28 AT3G17470 688 / 0.0 Ca2+-activated RelA/spot homolog, Ca2+-activated RelA/spot homolog (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0260 [flax] [poplar] NTP_transf PF04607 [flax] [poplar] RelA_SpoT Region found in RelA / SpoT proteins CL0237 [flax] [poplar] HD_PDEase PF01966 [flax] [poplar] HD HD domain
Representative CDS sequence Show only first row Show all	>Lus10003599 pacid=23159156 polypeptide=Lus10003599 locus=Lus10003599.g ID=Lus10003599.BGIv1.0 annot-version=v1.0 ATGGATTCTGCAGTGTCAGTGGAATGCATCAACTTGTGTAATTTTCCGAAAGGTGACATCAGCGGGAGATACGACTGTAGTGGCCTCTCTTGTGCTTGGA GAGCTCCCCGAGTCTTGACAGGATTTCTTGCTAGCACTGCGCATCCTTTTGTTTGCTCCTCATCGCCAAACAGAAGAAACCACTTAGTTTTTTGCCAGAG ACACAATGTCTTCAATGTGAAAGGAACTTATCCAAATGAAGCTGGTGAATCATCCCTTTATCAGAGACCCTTGAGAGACTATGAATTTGATAAAAGATGG CAGTTGTGTTGCTCTTCATCACTTTCCTCAAGCCTTTCCAATGAAATTTCTCCAGAAATTCTGTGGGAGGATCTCAGGCCCACTGTTTCATACCTTCCAC CAAAAGAATTGGATTTAGTCTATTGTGCTCTTATGCTTGCTTTCCAGGCTCATGATGGTCAGAAACGTCGTAGTGGGGAACCCTTTATCATTCATCCAGT TGAAGTTGCTAAGATTTTAGGAGAACTTGTGGGTTTCTTAGGGTCCCAATCTGAATTGGATTGGGAGTCAATTGCTGCAGGATTGCTACATGATACTGTT GAGGATACAGATGTTGTGAATTTCGAAAGAATAGAGAAGGAATTTGGGCCTGTAGTGCGCCACATTGTAGAAGGAGAGACTAAGGTGCTTTACAGACATC ATGGTATTCTGATCCTAGTCACCATGCAGGTCTCCAAACTTGGAAAACTGAAGTGTAAGAATGAGAATGATGCTGTGCAAGATGTGAAAGCTGATGACTT GCGACAGATGTTTCTTGCCATGACAGAGGAGGTCCGTGTTATCATTGTCAAATTAGCGGACAGATTGCATAACATGCGAACTCTATCGCACATGCCACCA CATAAACAGTCGAGCATTGCTACTGAAACACTTCAGGTTTTTGCACCTCTTGCCAAATTATTAGGAATGTATCAGATCAAGTCGGAGCTTGAAAACCTGT CATTCATGTATACAAATCCTGAAGATTATGCAAAAATAAAGGAGAGAGTTGCAGACCTTTATAAAGAGCATGAGACAGAGATTTTGGAGGCCAACAAGAT TTTGGAGAAGAAGATCGAGGAGGACCAGTTCCTAAACCTGATGACAGTAAACACTGAAGTGCACTCAGTATGTAGGGAGCCTTACAGTATCTATAAAGCT CTGCTTAAATCTAAGGGTTCGATCAGTGAAGTCAATCAAATTGCACAGCTCCGGATTATTGTAAGGCCAAAATTATCAAGTGAATTTGGGCCTTTGTGCA GCCCTCAACAGATATGCTATCCCGTACTCGGCTTGGTCCATGGGATCTGGACTCCGATTCCCCGTGCTATGAAGGACTACATTGCAACCCCAAAGCCTAA TGGATATCAAAGTCTTCATACGACTGTGATTCCGTTTCTGTACGAAAGCATGTTTCGTATTGAAGTGCAGGTGGCCCCCACTGCTCTATTTTCTGTTTAT GAAGAATATGAACTGTGCTTTATTAGAAAATCTCCCTATCGTGGCTTCTAG
AA sequence Show only first row Show all	>Lus10003599 pacid=23159156 polypeptide=Lus10003599 locus=Lus10003599.g ID=Lus10003599.BGIv1.0 annot-version=v1.0 MDSAVSVECINLCNFPKGDISGRYDCSGLSCAWRAPRVLTGFLASTAHPFVCSSSPNRRNHLVFCQRHNVFNVKGTYPNEAGESSLYQRPLRDYEFDKRW QLCCSSSLSSSLSNEISPEILWEDLRPTVSYLPPKELDLVYCALMLAFQAHDGQKRRSGEPFIIHPVEVAKILGELVGFLGSQSELDWESIAAGLLHDTV EDTDVVNFERIEKEFGPVVRHIVEGETKVLYRHHGILILVTMQVSKLGKLKCKNENDAVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPP HKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNPEDYAKIKERVADLYKEHETEILEANKILEKKIEEDQFLNLMTVNTEVHSVCREPYSIYKA LLKSKGSISEVNQIAQLRIIVRPKLSSEFGPLCSPQQICYPVLGLVHGIWTPIPRAMKDYIATPKPNGYQSLHTTVIPFLYESMFRIEVQVAPTALFSVY EEYELCFIRKSPYRGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02260		AT-RSH1, RSH1, ...	RELA-SPOT HOMOLOG 1, RELA/SPOT...		Lus10003599 [exp]	0	1
AT3G16000		MFP1	MAR binding filament-like prot...		Lus10025769 [exp]	1.4	0.9146
AT2G45660	MADS	ATSOC1, SOC1, A...	SUPPRESSOR OF OVEREXPRESSION O...		Lus10036543 [exp]	2.2	0.9111
AT4G21190		EMB1417	embryo defective 1417, Pentatr...		Lus10027533 [exp]	2.8	0.9123
AT1G01320			Tetratricopeptide repeat (TPR)...		Lus10030259 [exp]	3.2	0.9142
AT1G36160		GSD1, PAS3, GK,...	PASTICCINO 3, GLOSSYHEAD 1, GU...		Lus10024748 [exp]	5.5	0.9003
AT1G13040			Pentatricopeptide repeat (PPR-...		Lus10011646 [exp]	5.8	0.8958
AT2G24120		PDE319, SCA3	SCABRA 3, PIGMENT DEFECTIVE 31...		Lus10010771 [exp]	6.5	0.9082
AT3G22690			unknown protein		Lus10039355 [exp]	7.3	0.9074
AT5G20380		PHT4;5	phosphate transporter 4;5 (.1)		Lus10008040 [exp]	7.5	0.8937
AT1G76050			Pseudouridine synthase family ...		Lus10017250 [exp]	8.8	0.9062

Compare expression of checked genes

Lus10003599 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.