Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012422 [exp] 115 / 1e-28 ND / Lus10002965 [exp] 106 / 4e-25 ND / Lus10009341 [exp] 100 / 3e-22 ND / Lus10009736 [exp] 78 / 6e-15 AT5G35750 95 / 1e-20 histidine kinase 2 (.1) Lus10039455 [exp] 69 / 5e-12 AT3G01330 299 / 2e-97 E2F-LIKE 2, DP-E2F-like protein 3 (.1) Lus10042562 [exp] 53 / 5e-07 ND / Lus10007176 [exp] 49 / 3e-06 ND / Lus10007786 [exp] 46 / 6e-05 ND / Lus10028108 [exp] 42 / 0.0004 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G091800 [exp] 68 / 1e-11 AT5G37930 81 / 4e-16 Protein with RING/U-box and TRAF-like domains (.1) Potri.010G214500 [exp] 49 / 1e-05 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003602 pacid=23159186 polypeptide=Lus10003602 locus=Lus10003602.g ID=Lus10003602.BGIv1.0 annot-version=v1.0 ATGGGTCGTCCTAACGCAAGAGAATATCCATATCTTAATTCTAAAGTCGTGAAAACTCTGACATGCCGTCAGAGATGTTCGCCAAGACGAATTGCCGAAT GCATTCGTGTTGCATCCGATGACCGGAAGAGTTTACTCAAGATTTTAGGGTTGGAGAGGTTCATTGATGTTCAGTTAACATCAATTGAGATCAAGGTTGT TTCCTGGATCATCCAAAACTACAATTATGAGAATCATTCTATAACTCTACATGATGGCAAGGTATACAAACTGGTTCCTAACGATGTGCAACTAGTGTAT GGTCTTCCGAGAGGTAGAATTGATGTCCCGTCTCTCGAAGATGTTACTCGTGATACTACTGAGTCTTGGGCTGCAGAACTTCATTTGGTCCCTGATCCGG ACTATTATACACTCAACTCCATCAAGAATGCACTTGATGTAGTAGACTCTGATATAGATTGGGTGCGGCTGTTCTTTGTGTATATCTTTGGCTGTCTTTT CTGTCCTCCGCCTAATACGCATGTCGATTTGAGGTACTTGGCTTTTGTATCTAACGAGCAGCTGTTAAAGTTCAAGAACTATAACTGGTGCAAGTTTGTA CTAGAAAAGTTTAAGGACAATATGGTCGAGAGTAAAGACTGCAGTTACATGAAGGCTGATTTCTACTTTCTCATTGTTGCATTTCTATTGAAAGAATCAA AGTTGGTGGGTGGAGAATCAGTTCTTCAGTCTGTCACTAACAAGAGTGTCGTTGATTTCTTCAACTGTATCATTGGGGATTATTGTAGGGTGGAAAAAAT TCTGCCCAATGGTGATGAACCTGATTCTGATGATGAGGATGACAAGTTTGAGGTTAAGAAGAAGAAAAGGGTTGCTAGGGATGTTAACCTGAAAGACCTT ATCAAGGCTGATCTTAAGAAAAAGCAAAAAGGCAATGTTTATGTTGAGAACAAACGCGTGTCAAAGGTTGATGTTAAGAAAAGGCAAGAAGGCAACTTTC CTGTTGGGAAGAAACACGCATCAAAGGCTGATTCTAAGAAGAAGCGTATGGGCAAGGAGGTTGGTGTTGTTCATAAGAAACTTGTTACCAAGGTTGATGC CAAGAGGAAAAGAACCGCTGCTAGTGGAGATAAGGAGGTGAAAGGTGATAAAGGTCATCGTACGAAGAGGAAAAAAGTTGTAAATTGTGATTCAAGTGTT GGATTGGGAAAGAATAATATTGTCTTACCATCTGCTGGCATTTTTTGGTCTGATGTGAAAGGTGAACCTGAGGCTGTTGCCTTGTTGGATACCATGGTTG AAGCTCGGAATAGTTGTACGAATTTGATAAAGGATTATGACGTGGCAGTGTCAGCTCTTGAAAATTTCATCAAGAATTTGCAGGATTTTGAAGAAGGTTC TAAAACTGTCAAGGTTCATTTGCAGCAGGGCAGTGGAAGAGAATGCTCCATATCCATTGGGGATTATTGTAGGGTGAAAAAATTTCTGCCCAATGGTGAT GAACCTGATTCTGATGATGAGGATGACAAGTTTGAGGTTAAGAAGAAGAAAAGGGTTGCTCAGGATGTTAATCTGAAAGACCTTATCAAGGCTGATCTTA AGAAAAAGAAAAAAGGCAATGTTTACGTTGAGAAGAAACGCGTGCCAAAGATTGATGTTAAGAAAAGGCAAGAAGGCAACTTTCCTGCTGGGAAGAAACA TACATCAAAGGCTGATTCTAAGAAGAAGCGTATGGGCAAGGAGGTTGATGTTGTTCATAAGAAACTTGTTACCAAGGTTGATGCCAAGAGGAAAAGAACC ACTGCTAGTGGAGATAAGTAG
AA sequence Show only first row Show all	>Lus10003602 pacid=23159186 polypeptide=Lus10003602 locus=Lus10003602.g ID=Lus10003602.BGIv1.0 annot-version=v1.0 MGRPNAREYPYLNSKVVKTLTCRQRCSPRRIAECIRVASDDRKSLLKILGLERFIDVQLTSIEIKVVSWIIQNYNYENHSITLHDGKVYKLVPNDVQLVY GLPRGRIDVPSLEDVTRDTTESWAAELHLVPDPDYYTLNSIKNALDVVDSDIDWVRLFFVYIFGCLFCPPPNTHVDLRYLAFVSNEQLLKFKNYNWCKFV LEKFKDNMVESKDCSYMKADFYFLIVAFLLKESKLVGGESVLQSVTNKSVVDFFNCIIGDYCRVEKILPNGDEPDSDDEDDKFEVKKKKRVARDVNLKDL IKADLKKKQKGNVYVENKRVSKVDVKKRQEGNFPVGKKHASKADSKKKRMGKEVGVVHKKLVTKVDAKRKRTAASGDKEVKGDKGHRTKRKKVVNCDSSV GLGKNNIVLPSAGIFWSDVKGEPEAVALLDTMVEARNSCTNLIKDYDVAVSALENFIKNLQDFEEGSKTVKVHLQQGSGRECSISIGDYCRVKKFLPNGD EPDSDDEDDKFEVKKKKRVAQDVNLKDLIKADLKKKKKGNVYVEKKRVPKIDVKKRQEGNFPAGKKHTSKADSKKKRMGKEVDVVHKKLVTKVDAKRKRT TASGDK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10003602 [exp]	0	1
AT1G68990		MGP3	male gametophyte defective 3 (...		Lus10036844 [exp]	1.0	0.8941
AT4G16280		FCA	RNA binding;abscisic acid bind...		Lus10029574 [exp]	2.0	0.8896
AT1G04950		EMB2781, ATTAF6...	TBP-associated factor 6, EMBRY...		Lus10016578 [exp]	6.7	0.8711
AT5G42220			Ubiquitin-like superfamily pro...		Lus10021830 [exp]	16.5	0.8437
AT1G04300			TRAF-like superfamily protein ...		Lus10021216 [exp]	17.3	0.8569
AT3G59630			diphthamide synthesis DPH2 fam...		Lus10020375 [exp]	17.7	0.8575
AT1G67890			PAS domain-containing protein ...		Lus10016912 [exp]	18.3	0.8609
AT5G47430			DWNN domain, a CCHC-type zinc ...		Lus10004741 [exp]	27.3	0.8069
AT3G06620			PAS domain-containing protein ...		Lus10037772 [exp]	28.4	0.8507
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10010067 [exp]	33.3	0.8684

Compare expression of checked genes

Lus10003602 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.