Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003603 pacid=23159158 polypeptide=Lus10003603 locus=Lus10003603.g ID=Lus10003603.BGIv1.0 annot-version=v1.0 ATGGGTTTGATGGATACCATACATTGTATTAATGGCAAGTACATTCAAGTAGAACAAGCTGAAGAAAATGCAGAAGAAAAGGGAGCAGAAAAGGCTGAAG TAAAAGCAAAAGAAGAAGAAGATGAGGGAGATGATGACGATGACAAGAAAAAAGGAGGGAAGGAGAAAGATGAGGGAGATGGTGATGATCATAATAGAGG GGAGCAAGGGGATGGTGTTATTGTTAGCAAGGAGTCGAAGATGCCGATGGCAATAATGAGGAACAGAAAATTGAAGAACCAGAAAAACAAGTCGAAGAAA AAGCAGAATGAGGGAGATGATGATGATGACAAGAAAAAAGAAGAGAAGGAAACAAATGAGGGAGATGGTGATGATCATGATAGTGAGGGGCAAGGGGGTA GTCTTACTGTTGGTGAAGGTGTTGATGATGCTGATGGCAATCACGAGGACCAAAAAAACGAAGAATCGGAAAGTAAAGAAGAAACAGGCCAGCAACAACA ACGCAGACAAGGAGCTGCAATTGATTCTGATGTCATTTTTGGTGACATAGGTGGGTTGGGAGAAGTTGGCGGAACGGGTTTCATGGATACTGTACATAGT ATTAACACCGAGTACATTGAAGATAAAATGATATGGAGGACCTTCCGAAGTCTCCTGTCGACATGGGGACTGGAATTGCTTCTGTTTCATCCCCGTTAG
AA sequence Show only first row Show all	>Lus10003603 pacid=23159158 polypeptide=Lus10003603 locus=Lus10003603.g ID=Lus10003603.BGIv1.0 annot-version=v1.0 MGLMDTIHCINGKYIQVEQAEENAEEKGAEKAEVKAKEEEDEGDDDDDKKKGGKEKDEGDGDDHNRGEQGDGVIVSKESKMPMAIMRNRKLKNQKNKSKK KQNEGDDDDDKKKEEKETNEGDGDDHDSEGQGGSLTVGEGVDDADGNHEDQKNEESESKEETGQQQQRRQGAAIDSDVIFGDIGGLGEVGGTGFMDTVHS INTEYIEDKMIWRTFRSLLSTWGLELLLFHPR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10003603 [exp]	0	1
AT2G06210		VIP6, ELF8	VERNALIZATION INDEPENDENCE 6, ...		Lus10000472 [exp]	1.0	0.9383
AT5G42000			ORMDL family protein (.1.2)		Lus10033219 [exp]	1.7	0.9260
AT1G32420			F-box and associated interacti...		Lus10016866 [exp]	2.6	0.9187
AT1G31870			unknown protein		Lus10033140 [exp]	4.9	0.9165
AT5G12840	CCAAT	NF-YA1, ATHAP2A...	"nuclear factor Y, subunit A1"...		Lus10009944 [exp]	7.9	0.9171
AT2G45590			Protein kinase superfamily pro...		Lus10031678 [exp]	8.1	0.8936
AT3G56490		HIT3, HINT1	HISTIDINE TRIAD NUCLEOTIDE-BIN...		Lus10035409 [exp]	9.2	0.9160
AT4G31550	WRKY	ATWRKY11, WRKY1...	WRKY DNA-binding protein 11 (....		Lus10026936 [exp]	13.6	0.9345
AT2G28060			5'-AMP-activated protein kinas...		Lus10003355 [exp]	14.1	0.8732
AT1G05590		HEXO2, ATHEX3	BETA-HEXOSAMINIDASE 3, beta-he...		Lus10007899 [exp]	17.0	0.9107

Compare expression of checked genes

Lus10003603 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.