Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51130 323 / 8e-110 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008215 [exp] 464 / 4e-165 AT5G51130 295 / 6e-99 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G084700 [exp] 357 / 6e-123 AT5G51130 341 / 4e-117 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF06859 [flax] [poplar] Bin3 Bicoid-interacting protein 3 (Bin3) CL0063 [flax] [poplar] NADP_Rossmann PF02390 [flax] [poplar] Methyltransf_4 Putative methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10003604 pacid=23159183 polypeptide=Lus10003604 locus=Lus10003604.g ID=Lus10003604.BGIv1.0 annot-version=v1.0 ATGGCAGAAGCGAAGGAGAAGAGAGATGAAAATGTCGGGGAGAAGAAACGGAAGAGGGAGGAGAAGAAACAGAAGAAGAAGGATCATGAAAGAAAAGATG ACGAAAACAATCAATCTCAGACGGAGCAAAGTCAGAAGCAGAATGGTAAACAGAAACCACAACAGAATCAAGTTTCCGGAGGCAGCAACAACAAGAAGAA GAAACAAAAACTAGTCTTCCCGTTTGGAAATTACAAAAACTACTATGGATACCGTGCGTTTCCTTTGCTTGTTGACGAACAGATTGACGAAGGATTGGAT GAAGATCCAAGGCTTAAGGTCTTGAAAAAGGAGTGGTTTGAAGGGAAAGACTGTCTCGACATTGGCTGCAATAGCGGCCTCATGACTATTCATATCGCTA AAAAGTTCAACTGCCGGAGCATCCTTGGAATAGACATAGATCCTGATCGTGTTTCTGATGCGTATTGGCACTTGAGAAAATTTTCAAGAGAACATTCTGG GAGTTGTAGTACCAATGTTTCAAAGGAGCAAATCAGAGATAAATTAAATGCTGCTAAGAAAAGTACACAATCACAACTAGGGGAGGACAAGGAGATGGAA AATGGTGCATCAATTTGCAAGGGGAATAATTTATATGACGCGGTTTCCTTCCGACAAGAAAATTTCGTCGACAACCGGCACCCGCGCAAAAAGCCATATG ATGTTATTCTATGCTTGAGTGTGGCAAAGTGGATTCACTTGAACTGGGGAGATGATGGACTGATTAAACTATTCTCTGAAGTGTGGAAACTTCTTCTTCC GGGTGGCATTTTCATACTGGAGCCCCAACCTTGGGATTCGTATAAGAAAAACTATCAAGTCTCGGAGATTGCAGCGGAGAATTACAGAAAAATCGTGTTC TACCCGAAATATTTTCGAGAAATTCTACTAGATAAGATCGGTTTCAGATCCGTGGAGGACATCACATCCGAGTTGAGAGGGAGTAAAGCTGGGTTCAATC GGCCGATTTTCGCATTCCACAAATGA
AA sequence Show only first row Show all	>Lus10003604 pacid=23159183 polypeptide=Lus10003604 locus=Lus10003604.g ID=Lus10003604.BGIv1.0 annot-version=v1.0 MAEAKEKRDENVGEKKRKREEKKQKKKDHERKDDENNQSQTEQSQKQNGKQKPQQNQVSGGSNNKKKKQKLVFPFGNYKNYYGYRAFPLLVDEQIDEGLD EDPRLKVLKKEWFEGKDCLDIGCNSGLMTIHIAKKFNCRSILGIDIDPDRVSDAYWHLRKFSREHSGSCSTNVSKEQIRDKLNAAKKSTQSQLGEDKEME NGASICKGNNLYDAVSFRQENFVDNRHPRKKPYDVILCLSVAKWIHLNWGDDGLIKLFSEVWKLLLPGGIFILEPQPWDSYKKNYQVSEIAAENYRKIVF YPKYFREILLDKIGFRSVEDITSELRGSKAGFNRPIFAFHK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51130			S-adenosyl-L-methionine-depend...		Lus10003604 [exp]	0	1
AT5G64730			Transducin/WD40 repeat-like su...		Lus10003855 [exp]	4.6	0.8360
AT1G11480			eukaryotic translation initiat...		Lus10039708 [exp]	8.5	0.8669
AT5G51130			S-adenosyl-L-methionine-depend...		Lus10008215 [exp]	12.3	0.8265
AT5G37370		ATSRL1	PRP38 family protein (.1.2.3.4...		Lus10031361 [exp]	13.9	0.8640
AT4G22360			SWIB complex BAF60b domain-con...		Lus10016581 [exp]	14.3	0.8057
AT1G55150			DEA(D/H)-box RNA helicase fami...		Lus10015627 [exp]	19.4	0.8129
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Lus10040030 [exp]	24.0	0.7949
AT5G10510	AP2_ERF	PLT3, AIL6	PLETHORA 3, AINTEGUMENTA-like ...		Lus10012728 [exp]	26.6	0.8293
AT3G12170			Chaperone DnaJ-domain superfam...		Lus10013402 [exp]	27.2	0.8039
AT5G50320		EAST1, AtELP3, ...	HISTONE ACETYLTRANSFERASE OF T...		Lus10001102 [exp]	27.3	0.8343

Compare expression of checked genes

Lus10003604 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.