Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47650 679 / 0 UXS4 UDP-xylose synthase 4 (.1.2) AT3G62830 671 / 0 ATUXS2, UXS2, AUD1 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G53520 603 / 0 ATUXS1, UXS1 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) AT2G28760 485 / 1e-171 UXS6 UDP-XYL synthase 6 (.1.2.3) AT3G46440 484 / 2e-171 UXS5 UDP-XYL synthase 5 (.1.2) AT5G59290 481 / 9e-170 ATUXS3, UXS3 UDP-glucuronic acid decarboxylase 3 (.1.2) AT1G08200 120 / 3e-30 AXS2 UDP-D-apiose/UDP-D-xylose synthase 2 (.1) AT2G27860 116 / 1e-28 AXS1 UDP-D-apiose/UDP-D-xylose synthase 1 (.1) AT5G28840 112 / 2e-27 GME "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) AT1G53500 112 / 2e-26 ATRHM2, ATMUM4, RHM2, MUM4 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 2, ARABIDOPSIS THALIANA MUCILAGE-MODIFIED 4, NAD-dependent epimerase/dehydratase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030368 [exp] 708 / 0 AT3G62830 723 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10006510 [exp] 604 / 0 AT3G62830 637 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10015038 [exp] 583 / 0 AT3G53520 720 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Lus10024436 [exp] 580 / 0 AT3G53520 736 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Lus10025293 [exp] 562 / 0 AT3G53520 715 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Lus10037499 [exp] 517 / 0 AT3G62830 551 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10005155 [exp] 491 / 8e-174 AT2G28760 639 / 0.0 UDP-XYL synthase 6 (.1.2.3) Lus10001707 [exp] 489 / 3e-173 AT2G28760 636 / 0.0 UDP-XYL synthase 6 (.1.2.3) Lus10005450 [exp] 488 / 1e-172 AT3G46440 635 / 0.0 UDP-XYL synthase 5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G204400 [exp] 695 / 0 AT3G62830 723 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G129200 [exp] 691 / 0 AT3G62830 720 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.016G080500 [exp] 603 / 0 AT3G53520 736 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Potri.006G214000 [exp] 595 / 0 AT3G53520 709 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Potri.010G207200 [exp] 493 / 2e-174 AT2G28760 625 / 0.0 UDP-XYL synthase 6 (.1.2.3) Potri.008G053100 [exp] 489 / 3e-173 AT2G28760 623 / 0.0 UDP-XYL synthase 6 (.1.2.3) Potri.001G237200 [exp] 488 / 2e-172 AT3G46440 637 / 0.0 UDP-XYL synthase 5 (.1.2) Potri.004G189900 [exp] 115 / 3e-28 AT1G08200 717 / 0.0 UDP-D-apiose/UDP-D-xylose synthase 2 (.1) Potri.005G053000 [exp] 114 / 5e-28 AT5G28840 720 / 0.0 "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) Potri.013G040600 [exp] 111 / 7e-27 AT5G28840 723 / 0.0 "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10003605 pacid=23159177 polypeptide=Lus10003605 locus=Lus10003605.g ID=Lus10003605.BGIv1.0 annot-version=v1.0 ATGGCATCGGAGCTAACATTCAGAGGCCAAACCGGGGCTCAACCAGCAGCCGAATCTCACTCCACGAAGCCGTCTCCTCCTCCTCAGCAATGGATGTCTC CTATCCTCCGTCCGATTCACTACATCCTCCGTGAGCAGCGCCTGCTCTGTGTCCTCGCCGGCATTACCATAGCCGCCGCCATCTTCAGCCTCCTCCCGTC TGGCGACCGCCGCCACCAGCTCAGCAAGTACGATTTCGATCACGAGCAGATCACCACTACATTCAGGTCCGAATCTCACCACAGCCACCACTCGGCGGCA CTGGCGGGGCGGGGGGGGGGGGGAGAGGGGACGGTGGAGTCGGGGATCGGAGTCTCCGGGAGGATCCCGCTAGGGTTGAAAAGGAAATCGATGAGGATCG TGGTGACTGGAGGGGCCGGATTCGTGGGATCGCATCTGGTTGACAGGCTGATGGAGAGAGGCGACAGCGTTATAGTGGTGGACAATTTCTTCACGGGGAG GAAAGAGAACGTGATGCACCATTTCAAGAACCCTAGGTTCGAGATGATCCGGCACGACGTCGTTGAGCCTCTGCTGCTGGAGGTTGACCAGATCTACCAC TTGGCGTGCCCTGCTTCCCCTGTCCACTACAAGTACAACCCTGTCAAGACCATCAAGACCAATGTCGTCGGCACCCTCAACATGCTCGGCCTGGCCAAGC GTGTCGGAGCAAGGTTCTTGCTCACAAGTACCAGCGAGGTCTACGGTGACCCCCTCCAGCATCCCCAGGTCGAGACCTACTGGGGCAATGTCAATCCCAT TGGTGTGAGGAGTTGTTACGATGAAGGGAAGAGGACAGCGGAGACGCTGGCAATGGATTATCACAGGGGAGCCGGAGTTGAGGTGAGGATTGCAAGAATC TTCAATACATATGGCCCCAGAATGTGCATTGATGATGGACGGGTGGTCAGTAATTTCGTTGCTCAGGCACTGAGGAAGGAACCTATGACAGTGTATGGTG ATGGGAAACAGACCAGGAGTTTCCAATACGTCTCTGATTTGGTTGAGGGATTAATGCGTCTTATGGAAGGAGAACACGTCGGACCTTTCAATCTGGGCAA TCCTGGGGAATTCACAATGCTTGAGCTTGCTCAGGTGGTCCAGGAAACAATCGACCCAAATGCAAAGATCGAGTTCAGGCCGAACACTGAAGATGACCCG CACAAGAGGAAGCCAGACATCACAAAGGCGAAAGATATGCTCGGTTGGCAACCCAAAATCTCCCTCCGTAAGGGTCTTCCGCTCATGGTCTCTGACTTCC GCCAGCGTATCTTCGGCGACCAAAAGGAAGACAGCACCGGCACCGGCACCAAGTCTACTTCATCTTAA
AA sequence Show only first row Show all	>Lus10003605 pacid=23159177 polypeptide=Lus10003605 locus=Lus10003605.g ID=Lus10003605.BGIv1.0 annot-version=v1.0 MASELTFRGQTGAQPAAESHSTKPSPPPQQWMSPILRPIHYILREQRLLCVLAGITIAAAIFSLLPSGDRRHQLSKYDFDHEQITTTFRSESHHSHHSAA LAGRGGGGEGTVESGIGVSGRIPLGLKRKSMRIVVTGGAGFVGSHLVDRLMERGDSVIVVDNFFTGRKENVMHHFKNPRFEMIRHDVVEPLLLEVDQIYH LACPASPVHYKYNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQVETYWGNVNPIGVRSCYDEGKRTAETLAMDYHRGAGVEVRIARI FNTYGPRMCIDDGRVVSNFVAQALRKEPMTVYGDGKQTRSFQYVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDP HKRKPDITKAKDMLGWQPKISLRKGLPLMVSDFRQRIFGDQKEDSTGTGTKSTSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47650		UXS4	UDP-xylose synthase 4 (.1.2)		Lus10003605 [exp]	0	1
AT4G16380			Heavy metal transport/detoxifi...		Lus10039073 [exp]	3.0	0.8470
AT1G11770			FAD-binding Berberine family p...		Lus10038440 [exp]	7.2	0.8212
AT1G48030		mtLPD1	mitochondrial lipoamide dehydr...		Lus10043103 [exp]	11.5	0.8413
AT5G51830			pfkB-like carbohydrate kinase ...		Lus10031668 [exp]	15.5	0.8209
AT2G16890			UDP-Glycosyltransferase superf...		Lus10022221 [exp]	16.0	0.7801
AT2G18840			Integral membrane Yip1 family ...		Lus10025478 [exp]	19.3	0.8291
AT5G45420	MYB	maMYB	membrane anchored MYB, Duplica...		Lus10039841 [exp]	28.2	0.8194
AT1G79550		PGK	phosphoglycerate kinase (.1.2)		Lus10031167 [exp]	31.7	0.8090
AT1G17745		PGDH	D-3-phosphoglycerate dehydroge...		Lus10035758 [exp]	33.3	0.7653
AT5G42090			Lung seven transmembrane recep...		Lus10033235 [exp]	34.1	0.8111

Compare expression of checked genes

Lus10003605 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.