Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02840 278 / 5e-94 ATSRP34, SR1, SR34, At-SR34 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT4G02430 258 / 2e-86 SR34b, At-SR34b Serine/Arginine-Rich Protein Splicing Factor 34b, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G09140 252 / 3e-84 ATSRP30.1, ATSRP30.2, SR30, At-SR30 Serine/Arginine-Rich Protein Splicing Factor 30, SERINE-ARGININE PROTEIN 30 (.1.2) AT3G49430 240 / 6e-79 SRP34A, SR34a, At-SR34a Serine/Arginine-Rich Protein Splicing Factor 34a, SER/ARG-rich protein 34A (.1.2.3) AT2G24590 62 / 1e-11 RSZ22a, At-RSZ22a RS-containing zinc finger protein 22a, RNA recognition motif and CCHC-type zinc finger domains containing protein (.1) AT4G31580 62 / 2e-11 SRZ22, RSZP22, SRZ-22, RSZ22, At-RSZ22 RS-containing zinc finger protein 22, serine/arginine-rich 22 (.1.2) AT4G25500 62 / 5e-11 ATRSP40, AT-SRP40, ATRSP35, RS40, At-RS40 ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, arginine/serine-rich splicing factor 40, arginine/serine-rich splicing factor 35 (.1.2.3.4) AT3G61860 61 / 7e-11 ATRSP31, At-RS31 arginine/serine-rich splicing factor 31, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G37340 61 / 1e-10 RSZ33, ATRSZ33, RS2Z33, AT-RS2Z33 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3) AT5G52040 61 / 1e-10 ATRSP41, RS41, At-RS41 arginine/serine-rich splicing factor 41, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007869 [exp] 305 / 1e-104 AT1G02840 308 / 1e-105 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Lus10008218 [exp] 263 / 2e-87 AT1G02840 228 / 3e-73 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Lus10020656 [exp] 260 / 4e-86 AT1G02840 297 / 2e-100 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Lus10015564 [exp] 244 / 6e-81 AT3G49430 324 / 6e-112 Serine/Arginine-Rich Protein Splicing Factor 34a, SER/ARG-rich protein 34A (.1.2.3) Lus10032940 [exp] 244 / 2e-80 AT3G49430 328 / 7e-113 Serine/Arginine-Rich Protein Splicing Factor 34a, SER/ARG-rich protein 34A (.1.2.3) Lus10029885 [exp] 226 / 4e-71 AT1G02840 253 / 2e-81 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Lus10030374 [exp] 144 / 2e-42 AT1G02840 147 / 8e-45 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Lus10020123 [exp] 65 / 1e-12 AT4G31580 188 / 2e-61 RS-containing zinc finger protein 22, serine/arginine-rich 22 (.1.2) Lus10026925 [exp] 65 / 1e-12 AT4G31580 184 / 2e-59 RS-containing zinc finger protein 22, serine/arginine-rich 22 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G205025 [exp] 300 / 2e-102 AT1G02840 272 / 1e-90 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Potri.014G129900 [exp] 296 / 7e-101 AT1G02840 272 / 5e-91 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Potri.013G015500 [exp] 270 / 2e-90 AT1G09140 263 / 7e-88 Serine/Arginine-Rich Protein Splicing Factor 30, SERINE-ARGININE PROTEIN 30 (.1.2) Potri.005G024600 [exp] 264 / 4e-88 AT1G09140 258 / 6e-86 Serine/Arginine-Rich Protein Splicing Factor 30, SERINE-ARGININE PROTEIN 30 (.1.2) Potri.015G004600 [exp] 246 / 5e-82 AT3G49430 303 / 1e-103 Serine/Arginine-Rich Protein Splicing Factor 34a, SER/ARG-rich protein 34A (.1.2.3) Potri.012G021800 [exp] 244 / 1e-80 AT3G49430 317 / 2e-108 Serine/Arginine-Rich Protein Splicing Factor 34a, SER/ARG-rich protein 34A (.1.2.3) Potri.016G081700 [exp] 66 / 2e-12 AT2G37340 268 / 2e-89 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3) Potri.019G050600 [exp] 63 / 5e-12 AT1G23860 131 / 3e-39 RS-containing zinc finger protein 21 (.1.2.3.4) Potri.006G215200 [exp] 65 / 6e-12 AT2G37340 266 / 6e-89 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3) Potri.018G009100 [exp] 63 / 6e-12 AT4G31580 174 / 2e-55 RS-containing zinc finger protein 22, serine/arginine-rich 22 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10003606 pacid=23159168 polypeptide=Lus10003606 locus=Lus10003606.g ID=Lus10003606.BGIv1.0 annot-version=v1.0 ATGAGTAGCCGCGCCAGCAGGACTATCTATGTCGGAAATCTACCTGGAGATATTCGAGAGAGGGAAGTGGAAGATTTGTTCTACAAGTATGGACATATAG CTCACATGGATTTGAAGATTCCGCCAAGGCCCCCAGGCTATGCTTTTGTTGAGTTTGAAGATGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGG GTACGACTTTGATGGGCATCGTTTGCGGGTCGAACTTGCACATGGGGGCCGTGGAAATTCTTCCTCTGATCGCTACAGTAGTCATGGTGGTGGCGGTCGT GGTGGTGGTGGTGGTGGTCGTGGTCATGGGGTATCTAAACGATCTGAATATCGTGTATTGGTCACTGGCTTACCTTCCTCTGCTTCATGGCAAGACCTGA AGGATCACATGAGGCGAGCAGGAGATGTCTGCTTCTCCCAGGTGTTCCGTGATGACAATGGAACCACCGGGATTGTAGATTATACAAATTATGAAGACCT GAAATACGCTATCAAGAAACTTGATGATTCAGAGTTCCGAAATGCCTTTTCACGGGCATATGTTCGGGTAAAGGAGTATGATTCAAAGAGAGACGACTCT AGGAGTCCTAGTCGTGGAAGATCTCGTTCAAGAGGTCCCAGCCGAAGCCGCAGCCGCAGCCGTAGCCGTGCTCGCAGTTTGAGTCGAAGTAGGAGCTTAA GGTTTGCTCATTCACTCACTCTGTCTCTTCCCCATTCAAATGCCTTGTTTCCGGGACCGGAAAAATACTTGGTGGATCCCAAATTATAG
AA sequence Show only first row Show all	>Lus10003606 pacid=23159168 polypeptide=Lus10003606 locus=Lus10003606.g ID=Lus10003606.BGIv1.0 annot-version=v1.0 MSSRASRTIYVGNLPGDIREREVEDLFYKYGHIAHMDLKIPPRPPGYAFVEFEDARDAEDAIRGRDGYDFDGHRLRVELAHGGRGNSSSDRYSSHGGGGR GGGGGGRGHGVSKRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDDNGTTGIVDYTNYEDLKYAIKKLDDSEFRNAFSRAYVRVKEYDSKRDDS RSPSRGRSRSRGPSRSRSRSRSRARSLSRSRSLRFAHSLTLSLPHSNALFPGPEKYLVDPKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02840		ATSRP34, SR1, S...	Serine/Arginine-Rich Protein S...		Lus10003606 [exp]	0	1
AT1G02840		ATSRP34, SR1, S...	Serine/Arginine-Rich Protein S...		Lus10008218 [exp]	1.0	0.8817
AT5G14640		ATSK13	shaggy-like kinase 13 (.1)		Lus10022254 [exp]	3.5	0.8651
AT3G24440		VRN5, VIL1	VERNALIZATION 5, VIN3-LIKE 1, ...		Lus10019393 [exp]	8.9	0.8378
AT4G25550			Cleavage/polyadenylation speci...		Lus10038867 [exp]	9.8	0.7918
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Lus10043390 [exp]	11.0	0.8154
AT5G61060		HDA5, HDA05, AT...	histone deacetylase 5 (.1.2)		Lus10034689 [exp]	11.3	0.8403
AT1G15660		CENP-C	CENP-C HOMOLOGUE, centromere p...		Lus10011470 [exp]	12.4	0.8403
AT5G25800			Polynucleotidyl transferase, r...		Lus10029748 [exp]	13.2	0.8344
AT3G18640	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10020889 [exp]	14.5	0.8158
AT5G11200			DEAD/DEAH box RNA helicase fam...		Lus10014260 [exp]	16.2	0.8239

Compare expression of checked genes

Lus10003606 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.