Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44005 50 / 3e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008224 [exp] 160 / 2e-52 AT5G44005 57 / 6e-12 unknown protein Lus10008220 [exp] 159 / 2e-52 AT5G44005 55 / 4e-11 unknown protein Lus10003608 [exp] 140 / 7e-45 AT5G44005 55 / 4e-11 unknown protein Lus10008223 [exp] 122 / 1e-37 ND 41 / 6e-06 Lus10003609 [exp] 100 / 9e-29 AT5G44005 51 / 9e-10 unknown protein Lus10024940 [exp] 94 / 2e-26 ND 42 / 2e-06 Lus10008222 [exp] 88 / 1e-21 AT4G12010 327 / 4e-96 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10003607 [exp] 76 / 3e-19 ND 48 / 2e-08 Lus10008219 [exp] 71 / 2e-16 AT5G44005 56 / 2e-10 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G257600 [exp] 46 / 1e-07 ND / Potri.014G192100 [exp] 44 / 6e-07 AT5G44005 49 / 4e-09 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003610 pacid=23159178 polypeptide=Lus10003610 locus=Lus10003610.g ID=Lus10003610.BGIv1.0 annot-version=v1.0 ATGAAACTGATGAGCGGGCAAAGCATGAAAAGGGTACAGTTCCAGAGGTGGGGGAAGAGAATTAGTAGCTCCTTTACCGGTTCATCTTCATCTTCTGCTG CAGCTGCTGTGGCCATTGTTGTGGGGAGGAAGAAAAAGGGCGGTCCTTTGGGTTGGTGCTGTAGCAGGTCTTATGTACCAAGGAAATGGGTTAACAAGTT CAGAGCACAGTGGAAGAAGGCAATTGGTTGGAGGAAGAGCAGCAGTTGTGTTGAGTATAGATATGATATACAGAGCTATTCCCTCAACTTTGATGATGGT GGCTGTAGATGA
AA sequence Show only first row Show all	>Lus10003610 pacid=23159178 polypeptide=Lus10003610 locus=Lus10003610.g ID=Lus10003610.BGIv1.0 annot-version=v1.0 MKLMSGQSMKRVQFQRWGKRISSSFTGSSSSSAAAAVAIVVGRKKKGGPLGWCCSRSYVPRKWVNKFRAQWKKAIGWRKSSSCVEYRYDIQSYSLNFDDG GCR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44005			unknown protein		Lus10003610 [exp]	0	1
AT5G44005			unknown protein		Lus10003608 [exp]	1.4	0.9281
AT5G44005			unknown protein		Lus10008220 [exp]	2.0	0.9123
AT1G05000		AtPFA-DSP1	plant and fungi atypical dual-...		Lus10015154 [exp]	2.2	0.8734
AT1G77690		LAX3	like AUX1 3 (.1)		Lus10025628 [exp]	2.4	0.8775
AT2G36330			Uncharacterised protein family...		Lus10042123 [exp]	4.2	0.8350
AT2G47910		CRR6	chlororespiratory reduction 6 ...		Lus10038104 [exp]	4.5	0.8766
AT5G44005			unknown protein		Lus10003609 [exp]	6.5	0.8385
AT1G77690		LAX3	like AUX1 3 (.1)		Lus10028078 [exp]	6.9	0.8359
AT2G30800		ATVT-1, HVT1	helicase in vascular tissue an...		Lus10020727 [exp]	7.7	0.8449
AT1G16250			Galactose oxidase/kelch repeat...		Lus10002112 [exp]	8.8	0.8270

Compare expression of checked genes

Lus10003610 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.