Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G35720 475 / 3e-170 ATOXY5, ANNAT1 annexin 1 (.1) AT5G10230 403 / 5e-142 ANN7, ANNAT7 annexin 7 (.1) AT5G65020 401 / 3e-141 ANNAT2 annexin 2 (.1.2) AT5G10220 383 / 5e-134 ANN6, ANNAT6 ANNEXIN ARABIDOPSIS THALIANA 6, annexin 6 (.1) AT5G12380 303 / 2e-102 ANNAT8 annexin 8 (.1) AT2G38760 229 / 2e-73 ANN3, ANNAT3 annexin 3 (.1) AT1G68090 220 / 7e-70 ANN5, ANNAT5 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) AT2G38750 172 / 2e-51 ANNAT4 annexin 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008227 [exp] 645 / 0 AT1G35720 476 / 9e-171 annexin 1 (.1) Lus10041140 [exp] 504 / 0 AT1G35720 414 / 2e-146 annexin 1 (.1) Lus10036470 [exp] 498 / 2e-179 AT1G35720 406 / 3e-143 annexin 1 (.1) Lus10024054 [exp] 359 / 2e-124 AT5G65020 400 / 6e-141 annexin 2 (.1.2) Lus10041696 [exp] 351 / 3e-121 AT5G65020 395 / 2e-138 annexin 2 (.1.2) Lus10019780 [exp] 311 / 1e-105 AT5G12380 372 / 1e-129 annexin 8 (.1) Lus10024174 [exp] 263 / 8e-87 AT2G38760 361 / 4e-125 annexin 3 (.1) Lus10024172 [exp] 260 / 1e-85 AT2G38760 349 / 1e-120 annexin 3 (.1) Lus10039550 [exp] 234 / 1e-74 AT2G38760 323 / 2e-109 annexin 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G095600 [exp] 486 / 2e-174 AT1G35720 481 / 1e-172 annexin 1 (.1) Potri.007G092500 [exp] 436 / 5e-155 AT5G65020 488 / 2e-175 annexin 2 (.1.2) Potri.005G075900 [exp] 434 / 4e-154 AT5G65020 472 / 3e-169 annexin 2 (.1.2) Potri.003G200700 [exp] 314 / 9e-107 AT5G12380 399 / 3e-140 annexin 8 (.1) Potri.001G277500 [exp] 298 / 9e-101 AT5G12380 442 / 3e-157 annexin 8 (.1) Potri.001G024800 [exp] 255 / 1e-83 AT2G38760 395 / 1e-138 annexin 3 (.1) Potri.012G041900 [exp] 218 / 4e-69 AT1G68090 358 / 3e-124 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Potri.015G031800 [exp] 216 / 2e-68 AT1G68090 356 / 3e-123 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Potri.001G024900 [exp] 205 / 3e-64 AT2G38750 371 / 2e-129 annexin 4 (.1) Potri.008G139500 [exp] 193 / 2e-59 AT1G68090 363 / 4e-126 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00191 [flax] [poplar] Annexin Annexin
Representative CDS sequence Show only first row Show all	>Lus10003611 pacid=23159182 polypeptide=Lus10003611 locus=Lus10003611.g ID=Lus10003611.BGIv1.0 annot-version=v1.0 ATGGCCACTCTCACAGTTCCTCACCAGGTCCCCGATGTCGCTGAAGACTGCGACCAGCTCCGCAAGGCCTTTTCAGGATGGGGCACAAACGAGGGGTTGA TCATCTCGATTCTGGGACACAGGAACGCCGATCAGAGGAAGCTGATCAGAGAGACGTACCAATCCACCTACGGAGAAGAACTGCTCAAGGAACTCGACAG GGAGCTCTCCAACGACTTCGAGAGGGCTGTGCTGCTCTGGACGCTGAGCCCTGCCGAGCGCGATGCTATCTTGGCGAACGAAGCTACCAAGAGATGGACC TCCAGCAACCAGGTGATTATGGAGATCGCCTGCACCAGATCCTCCAAGCAGCTTCTGGATGCTAAACAGGCTTACCACGCTCGTTTCAAGAAATCGATTG AGGAGGATGTCGCTCATCACACCACTGGTGATTTCCGCAAGCTCCTCTTCTCCCTCATCGCCTGCCACCGCTATGAAGGGGATGAGGTCAACATGACTTT GGCTAAACAGGAAGCCAAGATCCTCAATGACAAGTTTGATGATAAGCATTTCGCCGATGATGAGGTGATCAGAATCCTCTCCACAAGGAGCAAAGTTCAA GTCAACGCTGCTCTGAACCAGTACAAGAGTCTTTACGGCCATGAAATCCTTGAGGCACTGAAGGAGGACTCGGATGACGAGTTCATTTGGCTGCTAAGGT CGACCATCAAGTGCCTGACTCGTCCGGAGGAGTACTTCGTGGAGGTGATCCATGGATCGATCCACAAGACAGGGACGGATGAAGGAGCACTTACAAGGGT TGTGGTGAGTAGGGCGGAGGTTGATCTGAAGATCATAAAAGAAGAGTACCAGCGAAGACACAGTGTGTCACTGGAGAAAGCCATTACCAAGGATACCTCT GGTGACTATGAGAAGATGCTCTTGGCACTTACTGGCCATCAGGATGACTGA
AA sequence Show only first row Show all	>Lus10003611 pacid=23159182 polypeptide=Lus10003611 locus=Lus10003611.g ID=Lus10003611.BGIv1.0 annot-version=v1.0 MATLTVPHQVPDVAEDCDQLRKAFSGWGTNEGLIISILGHRNADQRKLIRETYQSTYGEELLKELDRELSNDFERAVLLWTLSPAERDAILANEATKRWT SSNQVIMEIACTRSSKQLLDAKQAYHARFKKSIEEDVAHHTTGDFRKLLFSLIACHRYEGDEVNMTLAKQEAKILNDKFDDKHFADDEVIRILSTRSKVQ VNAALNQYKSLYGHEILEALKEDSDDEFIWLLRSTIKCLTRPEEYFVEVIHGSIHKTGTDEGALTRVVVSRAEVDLKIIKEEYQRRHSVSLEKAITKDTS GDYEKMLLALTGHQDD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G35720		ATOXY5, ANNAT1	annexin 1 (.1)		Lus10003611 [exp]	0	1
AT2G39010		PIP2E, PIP2;6	PLASMA MEMBRANE INTRINSIC PROT...		Lus10021475 [exp]	1.4	0.9202
AT3G11660		NHL1	NDR1/HIN1-like 1 (.1)		Lus10004202 [exp]	2.0	0.9196
AT2G37585			Core-2/I-branching beta-1,6-N-...		Lus10025339 [exp]	4.0	0.8237
AT5G57240		ORP4C	OSBP(oxysterol binding protein...		Lus10040586 [exp]	4.7	0.8371
					Lus10025897 [exp]	5.7	0.8947
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10030924 [exp]	6.8	0.8098
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10004318 [exp]	8.8	0.8668
AT4G02090			unknown protein		Lus10010014 [exp]	8.9	0.8439
AT4G38690			PLC-like phosphodiesterases su...		Lus10034483 [exp]	9.4	0.8103
AT1G07630		PLL5	pol-like 5 (.1)		Lus10024397 [exp]	9.6	0.8735

Compare expression of checked genes

Lus10003611 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.