Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G35710 669 / 0 Protein kinase family protein with leucine-rich repeat domain (.1) AT4G08850 656 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT5G63930 563 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G33170 554 / 1e-178 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G17230 548 / 2e-176 Leucine-rich receptor-like protein kinase family protein (.1) AT4G20140 529 / 1e-167 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G44700 528 / 2e-167 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT1G73080 525 / 2e-167 ATPEPR1, PEPR1 PEP1 receptor 1 (.1) AT1G17750 504 / 8e-160 AtPEPR2 PEP1 receptor 2 (.1) AT5G65700 494 / 7e-157 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008230 [exp] 1392 / 0 AT4G20140 466 / 3e-147 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10008712 [exp] 690 / 0 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020935 [exp] 676 / 0 AT4G08850 1011 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020936 [exp] 631 / 0 AT4G08850 793 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019036 [exp] 616 / 0 AT4G08850 891 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10002293 [exp] 608 / 0 AT1G35710 781 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10019035 [exp] 586 / 0 AT4G08850 861 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10004046 [exp] 579 / 0 AT4G08850 773 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10031161 [exp] 577 / 0 AT4G08850 710 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G195100 [exp] 1302 / 0 AT1G35710 681 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.002G258200 [exp] 1280 / 0 AT4G08850 674 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.002G258400 [exp] 1279 / 0 AT1G35710 681 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.002G258000 [exp] 1227 / 0 AT4G08850 695 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.014G195200 [exp] 793 / 0 AT1G35710 715 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G129100 [exp] 745 / 0 AT1G35710 863 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G120700 [exp] 705 / 0 AT1G35710 796 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G120733 [exp] 705 / 0 AT1G35710 796 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G122500 [exp] 688 / 0 AT1G35710 846 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.015G123800 [exp] 668 / 0 AT4G08850 751 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10003612 pacid=23159162 polypeptide=Lus10003612 locus=Lus10003612.g ID=Lus10003612.BGIv1.0 annot-version=v1.0 ATGACCACCCAACATATTTTCCTTCTCTTCTTCCATGCCATTTTGCTCTCCTTTCTTCCCCTAAACATCACAGCATTTTCAAGAACACAAGCCGAAGCTC TCATCAAATGGAAAACCACTCTAACTTACTCCCCTCCTTCCCTCAATTCATGGTCTCTTTCCAACCTGAGAAACCTTTGCAACTGGACCGGCATCACCTG CAACCGCTCAACTCGCTCTGTCTCTGGAATCACTCTCTCCAACTTAAACATAACTGGAGAACTTTCTCAGTTGGAGTTTGGTCAATTTGCAAATGTCACC AGCTTTGACATCCAGAACAACTTCATTGGTGGTGTCATACCATCCACCGTTGGTAGCCTTACCAAGCTAACTTACTTGGATTTAAGTGTCAACTCTTTTG TAGGTAATATACCTGCAGAGATTGGGCAGCTAATGGAGCTTCGTTATCTCAGCGTTTTCAACAACACTCTGAATGGTACGGTCTCTTTTCAAGTTAGCAG CCTTCAAAAAGTACAGTTCGTTGACCTTGGAGCCAACTACTTGGAGACCCCTGATTGGTCCGAATTTTCCGTGAATTCTTTCCAAGGACAGTTATCACCC AACATATCCAAGCTTTCCAAGCTTAAGAACCTTCACCTTTCAAGTAACAATTTCAGTGGTCAAATCCCTGCAAGTATTGGTTTTATCCCTAGCCTACAAG TGCTTGAGTTGTCCAACAATTTGTTACAAGGAAATATTCCTTCTTCTTTGGGCCGACTTAAGAAACTGGAACTACTAGATCTTGGAACGAATCACTTGAA CTCAACAGTACCTTCTGAGATTGGTCTCTGCACTGGTCTCACCTACCTAGGTTTAGCGTTAAATCAGCTTAGCGGAGAACTTCCATTGTCATTGTCCAAT CTGAATAACCTGTTGGAGTTTGGTTTATCTGATAATCTTTTCTCTGGAGTGATCTCAGCTGGCCTGTTTGCCAATTGGACACAGTTGGGATCTTTCCAAC TTCAAAACAACCTCTTATCAGGAACGATTCCGCCACAAATAGGAAAACTGAAGAATCTCAGTCTTCTTTTCCTATACAATAATACACTTTCTGGTCCAAT TCCCCCAGAGATTGGACACCTGGAAAGTTTGTCACTTCTGGACCTGTCAGTAAATCATCTTTCAGGGAGGATTCCTGCAACAATATGGTTTCTCACAAGT CTCGACACTTTGAATCTTTTCTCCAACAATCTCAGTGGCACAATTCCTCCACAGGTTGGGAATATGAAATCATTGAGAGTTCTTGATCTCAACTCCAACC AACTGTATGGAGAGTTACCGGAGACCATTTCCAACCTCGTCTCTTTGAATTCAATCAGCCTATTCAACAACAATTTCAGCGGCTCCGTTCCCAGAGACCT TGGGAAGCACATGCCTTCTCTCCAACGTGCTAGCTTCTCTGAGAACAGCTTCTCCGGAGAGTTGCCTCCTGAACTATGTAGTGGTTTGGCTCTTGAACAA CTGAATGTTAATGCAAACAACTTTACAGGGTCACTGCCTTCCTGTCTGAAAAATTGTTCGGAGCTAGTTAGACTCCGGCTCGATGAGAACCAGTTCACTG CCAACATCACTGATGCTTTTGGAGTCCATCCAAATCTTGTTTTCGTGTCTCTCGCAGGAAATCAGTTTGTGGGGGCCATATCCTCACTGTGGGGAGAATG CAAGAACCTCACTAACTTGCAGCTGGATGGAAACAGGATTTCTGGTAAAATTCCTACCGCGCTTGGAAAGTTGCACAATTTGAGGGTTCTGACTCTGGAA TCAAATGACTTGAGGGGGACTATTCCTCCTGAGTTGGGTAATCTAACCTTTCTATACAGGCTTAATCTGAGCAGCAATTACTTGATAGACGAGATCCCTC GAACCCTAGGCGGACTGTCAAAGCTCGAGTCTCTTGATTTATCTGGCAACAATCTGACTGGAGATGTTCCCAAAGAGCTTGGTAACTGTGAGAAGTTGTC AAGTTTAGACTTGAGCCATAACAATCTATGGGGAGAAATCCCATCCGAGCTTGGTAATCTAATGGCATTACAGTACCTATTGGACCTCAGCAGCAACTCG CTCTCAGGAGAAATACCTCAAAATCTGGGGAAGCTATCAGCATTGGAGAATCTCAACATCTCACATAATAATCTAATGGGGAGGATTCCAAATTCTGTAT CCGGAATGTTAAGTCTGCATGTTATTGACTTCTCGTACAACAATCTGACAGGTTCTATTCCAACTGATAACTTCTTCCGCAATGCATCTCCAGAAGCTTT TGCTGGTAATCCTGGCTTGTGCGGCAAACTAGAAGGCTTACCTCCATGCAATCCAAAAAACAGCACTGGTTCCTCCAAGTACAACAAGAAGATTCTCATT AGCATCATCGTTCCAGTTTGTGGGCTACTGCTGGGGCTAGCAGCTGCTTTGCTTATTGCGTGTCGACGAAGACATCAGCTTGCGGATGAAGATGTTAAAA GCATGAACAAGTACGAGGCTTCCAACTCGTTAATTTGGGACAGGGATGGTAAGTTCACATTCGGAGACGTTTCCAAGGCCACCGATAACTTCAACGACAA GTTTTGCATCGGAAGAGGAGGGTTTGGTAGTGTGTACAGAGCAGAGATGACAACGGGGCAAGTTGTGGCAGTGAAGAAGCTGAATGTTTCGAGTTCAGGC GAGGTCCCAGCTGCAAATCAGCAGAGTTTCGAGAATGAGATCAGGATGTTGACGGAGATCAGGCACAGGAACATCATCAAGCTGTACGGGTTCTGTTCAA GTAAAGGGTGCTTGTACTTGGTGTATGAGTACATTGAAAGAGGAAGTCTAGGGAAAGTTTTGTCCGGGATAGAAGGCGAATCTGAGCTTGGTTGGGCTAC TAGGGTGAAAATCGTCAAAGGTTTGGCTCATGCAATTGCTTACTTGCACCATGACTGCACGCCTGCAATCGTGCATCGAGATATATCTATGAACAATGTG TTGGTGGAGTCGGATTTCGAGCCGAGGCTTGCTGATTTCGGGACAGCTCGATTGCTCAGCACGGATTCGTCCAACTGGACTGCAGTGGCTGGTTCTTATG GTTACATGGCTCCTGAGCTGGCAGTGACAATGAGAGTAACAGACAAATGCGACGTCTACAGTTTCGGAGTGGTGGCGATGGAAATCATGATGGGAAAGCA CCCAGGAGAGTTCTTATTATCATCCCCTGCAGATAACAACAGTGAGCTATGCTTGAAGGAGATTCTAGACCAGAGGATTCCTGGTCCCACGGATCAGTTA GCTGAGGAGGTGCTATTCGTACTAACAGCTGCATTGGCTTGTACCCGAACCAAGCCCGATTTACGACCCACAATGCGGTTCGTGGCACAGGAAATCTCGG CTCGAACTCAGCCACTGGATAAGATTACAGTCAGCAAGGTGACTGGGTTCCAGAAATAG
AA sequence Show only first row Show all	>Lus10003612 pacid=23159162 polypeptide=Lus10003612 locus=Lus10003612.g ID=Lus10003612.BGIv1.0 annot-version=v1.0 MTTQHIFLLFFHAILLSFLPLNITAFSRTQAEALIKWKTTLTYSPPSLNSWSLSNLRNLCNWTGITCNRSTRSVSGITLSNLNITGELSQLEFGQFANVT SFDIQNNFIGGVIPSTVGSLTKLTYLDLSVNSFVGNIPAEIGQLMELRYLSVFNNTLNGTVSFQVSSLQKVQFVDLGANYLETPDWSEFSVNSFQGQLSP NISKLSKLKNLHLSSNNFSGQIPASIGFIPSLQVLELSNNLLQGNIPSSLGRLKKLELLDLGTNHLNSTVPSEIGLCTGLTYLGLALNQLSGELPLSLSN LNNLLEFGLSDNLFSGVISAGLFANWTQLGSFQLQNNLLSGTIPPQIGKLKNLSLLFLYNNTLSGPIPPEIGHLESLSLLDLSVNHLSGRIPATIWFLTS LDTLNLFSNNLSGTIPPQVGNMKSLRVLDLNSNQLYGELPETISNLVSLNSISLFNNNFSGSVPRDLGKHMPSLQRASFSENSFSGELPPELCSGLALEQ LNVNANNFTGSLPSCLKNCSELVRLRLDENQFTANITDAFGVHPNLVFVSLAGNQFVGAISSLWGECKNLTNLQLDGNRISGKIPTALGKLHNLRVLTLE SNDLRGTIPPELGNLTFLYRLNLSSNYLIDEIPRTLGGLSKLESLDLSGNNLTGDVPKELGNCEKLSSLDLSHNNLWGEIPSELGNLMALQYLLDLSSNS LSGEIPQNLGKLSALENLNISHNNLMGRIPNSVSGMLSLHVIDFSYNNLTGSIPTDNFFRNASPEAFAGNPGLCGKLEGLPPCNPKNSTGSSKYNKKILI SIIVPVCGLLLGLAAALLIACRRRHQLADEDVKSMNKYEASNSLIWDRDGKFTFGDVSKATDNFNDKFCIGRGGFGSVYRAEMTTGQVVAVKKLNVSSSG EVPAANQQSFENEIRMLTEIRHRNIIKLYGFCSSKGCLYLVYEYIERGSLGKVLSGIEGESELGWATRVKIVKGLAHAIAYLHHDCTPAIVHRDISMNNV LVESDFEPRLADFGTARLLSTDSSNWTAVAGSYGYMAPELAVTMRVTDKCDVYSFGVVAMEIMMGKHPGEFLLSSPADNNSELCLKEILDQRIPGPTDQL AEEVLFVLTAALACTRTKPDLRPTMRFVAQEISARTQPLDKITVSKVTGFQK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G35710			Protein kinase family protein ...		Lus10003612 [exp]	0	1
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Lus10008230 [exp]	1.0	0.9755
AT5G22860			Serine carboxypeptidase S28 fa...		Lus10008358 [exp]	2.0	0.9349
AT1G75500		WAT1	Walls Are Thin 1 (.1.2)		Lus10024301 [exp]	3.0	0.9077
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10036586 [exp]	3.0	0.9293
AT5G48800			Phototropic-responsive NPH3 fa...		Lus10025928 [exp]	3.7	0.9149
AT2G47500			P-loop nucleoside triphosphate...		Lus10010301 [exp]	4.2	0.9164
AT4G32880	HD	ATHB8, ATHB-8	homeobox gene 8 (.1)		Lus10011426 [exp]	4.5	0.9253
AT5G48740			Leucine-rich repeat protein ki...		Lus10025926 [exp]	5.0	0.9211
AT3G50660		PSC1, CYP90B1, ...	SUPPRESSOR OF NPH4 2, SHADE AV...		Lus10024016 [exp]	8.5	0.8846
AT4G27430		CIP7	COP1-interacting protein 7 (.1...		Lus10043092 [exp]	11.3	0.9132

Compare expression of checked genes

Lus10003612 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.