Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04030 128 / 1e-32 unknown protein AT5G44040 110 / 3e-26 unknown protein AT2G30820 58 / 6e-09 unknown protein AT1G06660 58 / 6e-09 JASON JASON, unknown protein AT2G33400 42 / 0.0004 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008231 [exp] 543 / 0 AT1G04030 202 / 1e-59 unknown protein Lus10020732 [exp] 59 / 4e-09 AT1G06660 310 / 1e-100 JASON, unknown protein Lus10001051 [exp] 57 / 1e-08 AT1G06660 283 / 6e-90 JASON, unknown protein Lus10001417 [exp] 54 / 2e-07 AT1G06660 228 / 3e-69 JASON, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G258501 [exp] 171 / 2e-48 AT1G04030 172 / 1e-48 unknown protein Potri.013G047700 [exp] 84 / 3e-17 AT1G04030 147 / 1e-39 unknown protein Potri.002G057000 [exp] 71 / 5e-13 AT1G06660 325 / 7e-106 JASON, unknown protein Potri.005G205700 [exp] 64 / 7e-11 AT1G06660 275 / 6e-87 JASON, unknown protein Potri.010G067300 [exp] 45 / 5e-05 AT2G33400 79 / 1e-16 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003613 pacid=23159159 polypeptide=Lus10003613 locus=Lus10003613.g ID=Lus10003613.BGIv1.0 annot-version=v1.0 ATGGGTTGCTTCCTTGGGTGTTTTGGTTCCTCCAAAGATCGCCGGAGAAAATCCCGTAAGCAGCAGCAGCAGCGCAAGAAGCACAACAAGGTTCAGCCTC GTTACCAGAGGAATGCCGGTGATCAACATCTTGTGCCATCTATTGTTCTGATTGAGGATCAGAATGAGATACCAGAGAAACCAGTGATAATCAGCTCAGT CGTGGAAGAAGAAATCCAGGAGGAGTTGACCAGTGCGGTTCTTCGTAAAAAAGTAACGTTTGATTCCAATGTGAGGACTTACGAGCCAGTTTCTGTGAAA GAATCCGCTGAATTTCTTCCCCCGGAGAAAGATGAACAAAAAGAAGATAATGACGAGTACAAGCTTAGAAAGCAAGACCAATCCGATGCATCGTCTGAAG CCAGTTCCGTGACCTCAAGCTCCACCTCTTACCCATCCAATCATCGGTACCAGAATTGTCGAGATAGCGATGATGAATTGGATATGGAGGACCGATCTGA TTCCGATTCTGATGAGGATTCTGATGCAGACGATTATGAGAATGGGGAGCTGGAATACAACAAAATGTACGACGATCCGAGCTCTAGATTTGCAGTCTAC GAGGAGGGTTTCGAGGGAAAGCCAGGTCGGAATGTACGAGAGAGGAGTGGATATGTACATCCAGTGCTGAATCCAGTAGAGAATCTGAGCCAATGGAAGG CTGCCAAATCTAAAAAGTCATCTTCAGCAGTAGCAACACCACAATTGAAGCCTTCTGACAAGGAGAATCATGAACAAGAAACCCTAGAGCCTTGCTTCAA GGTCAAGAAACCAAACAAGGAGGAAGTAGTAGGAGTAGCAGTGGATGCCAGCTTATCCAACTGGTTGAGTGCCACATCATCATTGTCCTCAGACTGCTGC ACTACACCACTCAATAAGCAGCAGCCTGCTACTACCTCTACACTTAGTCCACCGGAGAGGAGCTACTCGGGCTCCCCGAATAGCTTCGAGGACCGGCCGA TCCTGGGGGCATTGACACTGGAAGAGATAAGGCAGATGTCGGCATCGAATTCGCCCATGAGGAAGTCGCCCGGTGGTCACAGCCCAGATGACATGCCCAT TATTGGGAGTGTTGGGAGCTATTGGAGTGAGAGTGATAACAGCAGCAGTAGTAAGAAGGAACTCAGCTCCGCCGCTTCTTCATCTTTTAAAGGGATCCCT AACACTACCAGCAAGTACAGAGAGGATAAGAGAGTGAATTGGCACACAACTCCATTTGAGACGAGGCTGGAGAGAGCTTTGAATAATGCAGGCCGAGTTG GTGGTGCTGATGATGCTTGTTAA
AA sequence Show only first row Show all	>Lus10003613 pacid=23159159 polypeptide=Lus10003613 locus=Lus10003613.g ID=Lus10003613.BGIv1.0 annot-version=v1.0 MGCFLGCFGSSKDRRRKSRKQQQQRKKHNKVQPRYQRNAGDQHLVPSIVLIEDQNEIPEKPVIISSVVEEEIQEELTSAVLRKKVTFDSNVRTYEPVSVK ESAEFLPPEKDEQKEDNDEYKLRKQDQSDASSEASSVTSSSTSYPSNHRYQNCRDSDDELDMEDRSDSDSDEDSDADDYENGELEYNKMYDDPSSRFAVY EEGFEGKPGRNVRERSGYVHPVLNPVENLSQWKAAKSKKSSSAVATPQLKPSDKENHEQETLEPCFKVKKPNKEEVVGVAVDASLSNWLSATSSLSSDCC TTPLNKQQPATTSTLSPPERSYSGSPNSFEDRPILGALTLEEIRQMSASNSPMRKSPGGHSPDDMPIIGSVGSYWSESDNSSSSKKELSSAASSSFKGIP NTTSKYREDKRVNWHTTPFETRLERALNNAGRVGGADDAC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04030			unknown protein		Lus10003613 [exp]	0	1
AT1G04030			unknown protein		Lus10008231 [exp]	1.0	0.9813
AT5G44530			Subtilase family protein (.1)		Lus10038416 [exp]	3.0	0.9359
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10018459 [exp]	3.2	0.9381
AT3G60190		ADL1E, ADL4, AD...	ENHANCED DISEASE RESISTANCE 3,...		Lus10040117 [exp]	5.4	0.9194
AT5G18700		RUK, EMB3013	RUNKEL, EMBRYO DEFECTIVE 3013,...		Lus10033979 [exp]	6.0	0.9565
AT3G54750			unknown protein		Lus10029345 [exp]	7.7	0.9323
AT5G15510			TPX2 (targeting protein for Xk...		Lus10030650 [exp]	9.6	0.9396
AT1G23790			Plant protein of unknown funct...		Lus10013007 [exp]	11.2	0.9371
AT1G24510			TCP-1/cpn60 chaperonin family ...		Lus10011401 [exp]	11.3	0.9004
AT3G51740		IMK2	inflorescence meristem recepto...		Lus10014236 [exp]	13.3	0.9355

Compare expression of checked genes

Lus10003613 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.