Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46050 726 / 0 ATPTR3, PTR3 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) AT5G46040 695 / 0 Major facilitator superfamily protein (.1) AT2G40460 584 / 0 Major facilitator superfamily protein (.1) AT3G54140 526 / 0 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT5G01180 509 / 1e-175 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT1G62200 490 / 8e-168 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT2G02040 487 / 8e-167 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT2G02020 457 / 1e-155 AtPTR4 peptide transporter 4, Major facilitator superfamily protein (.1.2) AT3G53960 449 / 1e-151 Major facilitator superfamily protein (.1) AT2G37900 437 / 2e-147 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008232 [exp] 1177 / 0 AT5G46050 729 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10022891 [exp] 816 / 0 AT5G46050 714 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10022892 [exp] 796 / 0 AT5G46050 688 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10011786 [exp] 791 / 0 AT5G46050 831 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10023743 [exp] 790 / 0 AT5G46050 827 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10024935 [exp] 753 / 0 AT5G46050 654 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10034206 [exp] 558 / 0 AT2G40460 783 / 0.0 Major facilitator superfamily protein (.1) Lus10024933 [exp] 552 / 0 AT5G46050 467 / 2e-161 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10030947 [exp] 507 / 2e-174 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G258900 [exp] 888 / 0 AT5G46050 730 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.002G258700 [exp] 831 / 0 AT5G46050 695 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.010G068100 [exp] 808 / 0 AT5G46050 829 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.008G170100 [exp] 806 / 0 AT5G46050 816 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.019G055800 [exp] 602 / 0 AT2G40460 874 / 0.0 Major facilitator superfamily protein (.1) Potri.010G100200 [exp] 511 / 3e-176 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.009G042400 [exp] 511 / 3e-176 AT3G54140 832 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.001G248600 [exp] 504 / 1e-173 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.016G111800 [exp] 503 / 2e-173 AT3G54140 893 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.006G096800 [exp] 501 / 1e-172 AT3G54140 896 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10003614 pacid=23159181 polypeptide=Lus10003614 locus=Lus10003614.g ID=Lus10003614.BGIv1.0 annot-version=v1.0 ATGGTGACAGGTCGGACCGATGAAGGGCATGATTATACAGAGGATGGGACTGTTGATCTCAAGGGCAAGCTTGTTTACCGGTCCAAAACTGGGAGGTGGA AAGCTTGTTCCTTCGTTGTCGGCTATGAAGCGTTTGAAAGAATGGCATATTATGGAATAGCATCAAACCTGGTGTTATACTTGAGGCACAAGCTTCGTGA AGGCACAGTATCATCTTCAAACCACGTCACCAACTGGGTTGGTACTGTATGGATGCTGCCCGTTTTCGGTGCTTATGTCGCAGATGCGCGCCTTGGTAGG TACTGGACCTTTGTCATTGCCTCCGCCATCTATCTCATGGGAATGACCCTATTGACACTATCAGTTTCGGTACCGGGACTGAAGCCTCCATCATGTGGTG GTAATATCAAAGAAGAGGACTGCCCTTTAAGGGCCTCTAATATTCAGAGGGGAGTTTTCTACACGGCTTTGTACATCATTGCAGTCGGAACAGGTGGGAC CAAGCCCAACATTTCGACCATCGGAGCAGACCAGTTCGACGAGTTTGAACCGAAAGAGAAGAAGAGCAAGCTGTCTTTCTTCAACTGGTGGATGTTCAGC ATTTTCTTTGGGACTTTGTTCTCAAACACTTTTCTGGTTTACATTCAAGACAATGTGAGCTGGACAGTCGGATACGCTCTTCCAACTGCGGGACTAGCGA TCTCGATTGCTATCTTTTTAGTTGGAACACCATTCTACAGACACAGAATCCCTGCTGGCAGTCCTTTCACCAAGATGGCTCAGGTCTTTGTGGCTGCTTC CCGGAAAAGGAATGTGTGTATCCCAAGTGATCCATCTGACTTGCATGAACTCGGGTTGGAGGAGTACTCAAGAGCAGGAAAGTTTCAGGTTTATCATACT GCTTCTTTAAGTTTTCTTGACAAAGCTGCTGTGAAGAACAAATCAGGCTCACCATGGATGTTGTGTCCTGTAACTCAAGTTGAAGAAACCAAACAAATGA TCCAGCTTCTCCCAGTTTTCATTGCCACAATTGTACCCAGCATCATCATTGCTCAAATAAACACCTTGTTTATTCAGCAAGGAACTACTCTCGAAAGAAG TATGGGACCGAATTTCGACATCCCTCCAGCCTGCCTAACCGCATTTGTCACCATATCTATGCTCGTCTCCCTTGTTATCTACGACCGCGTCCTAGTTCCA GCTTCCAGGCGATGCACGAAGAATCCAAGAGGGATCAGTCTCCTGCAAAGGATGGGAATCGGCCTTTTGTTACAGATCATCACAGTTGCGGCTGCCTGTT TGGCAGAGAGACGAAGGCTCAGTGTAATTAGAGAACATAACCTCATTGGAAAACATGACAAGTTGCCTCTCACAATCTTTATCCTACTGCCACAGTTTGT ACTGATGGGGGTTGCTGATGCATTCGTTGAAGTTGCGAGAATCGAGTTTTTCTACGATCAAGCACCGCAAGGGATGAAGAGCCTTGGAACCTCATACTTC ACCTCTGGGTTGGGAATTGGGAATTTCATGAGTAGTGTTCTTCTGAGAACAGTTGCTAATGTTACAAAGAAGCATGCCAAAAGAGGGTGGATCCTGGATA ACTTGAATCTCTCCCATGTGGATTACTACTATGCACTTTTGGCCATCCTTAGCATCGTCAACTTGTTCTATTTTCTTGTAGTTTCCAAATTCTATGTGTA TAGTGCAGATATAAGCTGCAGAGGAAAGGAATCTGATGAAGCGAACGAGAACTCGCTGCAGTGA
AA sequence Show only first row Show all	>Lus10003614 pacid=23159181 polypeptide=Lus10003614 locus=Lus10003614.g ID=Lus10003614.BGIv1.0 annot-version=v1.0 MVTGRTDEGHDYTEDGTVDLKGKLVYRSKTGRWKACSFVVGYEAFERMAYYGIASNLVLYLRHKLREGTVSSSNHVTNWVGTVWMLPVFGAYVADARLGR YWTFVIASAIYLMGMTLLTLSVSVPGLKPPSCGGNIKEEDCPLRASNIQRGVFYTALYIIAVGTGGTKPNISTIGADQFDEFEPKEKKSKLSFFNWWMFS IFFGTLFSNTFLVYIQDNVSWTVGYALPTAGLAISIAIFLVGTPFYRHRIPAGSPFTKMAQVFVAASRKRNVCIPSDPSDLHELGLEEYSRAGKFQVYHT ASLSFLDKAAVKNKSGSPWMLCPVTQVEETKQMIQLLPVFIATIVPSIIIAQINTLFIQQGTTLERSMGPNFDIPPACLTAFVTISMLVSLVIYDRVLVP ASRRCTKNPRGISLLQRMGIGLLLQIITVAAACLAERRRLSVIREHNLIGKHDKLPLTIFILLPQFVLMGVADAFVEVARIEFFYDQAPQGMKSLGTSYF TSGLGIGNFMSSVLLRTVANVTKKHAKRGWILDNLNLSHVDYYYALLAILSIVNLFYFLVVSKFYVYSADISCRGKESDEANENSLQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10003614 [exp]	0	1
					Lus10025505 [exp]	21.6	0.7950
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Lus10027327 [exp]	33.3	0.7165
AT3G27950			GDSL-like Lipase/Acylhydrolase...		Lus10022233 [exp]	47.6	0.7640
AT3G51240		TT6, F3'H, F3H	TRANSPARENT TESTA 6, flavanone...		Lus10041913 [exp]	67.6	0.6901
AT4G01580	B3		AP2/B3-like transcriptional fa...		Lus10000750 [exp]	84.2	0.7390
					Lus10005604 [exp]	89.3	0.7226
AT3G47570			Leucine-rich repeat protein ki...		Lus10037889 [exp]	100.6	0.6945
AT2G16730		BGAL13	beta-galactosidase 13, glycosy...		Lus10027843 [exp]	129.7	0.6653
AT4G31680	B3	REM8	Transcriptional factor B3 fami...		Lus10010080 [exp]	161.7	0.6994
AT2G44220			Protein of Unknown Function (D...		Lus10036998 [exp]	188.1	0.6995

Compare expression of checked genes

Lus10003614 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.