Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04010 1005 / 0 ATPSAT1 phospholipid sterol acyl transferase 1 (.1) AT5G13640 77 / 2e-14 PDAT1, ATPDAT PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) AT3G44830 62 / 6e-10 Lecithin:cholesterol acyltransferase family protein (.1) AT1G27480 50 / 3e-06 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008234 [exp] 1281 / 0 AT1G04010 991 / 0.0 phospholipid sterol acyl transferase 1 (.1) Lus10024927 [exp] 1196 / 0 AT1G04010 1021 / 0.0 phospholipid sterol acyl transferase 1 (.1) Lus10021564 [exp] 86 / 4e-17 AT5G13640 989 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Lus10037657 [exp] 85 / 1e-16 AT5G13640 1049 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Lus10015639 [exp] 83 / 4e-16 AT5G13640 1053 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Lus10017165 [exp] 82 / 6e-16 AT5G13640 991 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Lus10019519 [exp] 73 / 4e-13 AT3G44830 923 / 0.0 Lecithin:cholesterol acyltransferase family protein (.1) Lus10007728 [exp] 50 / 4e-06 AT1G27480 484 / 3e-170 alpha/beta-Hydrolases superfamily protein (.1) Lus10018664 [exp] 49 / 1e-05 AT1G27480 491 / 5e-173 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G195500 [exp] 1119 / 0 AT1G04010 1040 / 0.0 phospholipid sterol acyl transferase 1 (.1) Potri.001G171000 [exp] 83 / 2e-16 AT5G13640 1055 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Potri.003G063100 [exp] 78 / 1e-14 AT5G13640 1077 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Potri.004G190100 [exp] 59 / 1e-08 AT3G44830 911 / 0.0 Lecithin:cholesterol acyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF02450 [flax] [poplar] LCAT Lecithin:cholesterol acyltransferase
Representative CDS sequence Show only first row Show all	>Lus10003615 pacid=23159161 polypeptide=Lus10003615 locus=Lus10003615.g ID=Lus10003615.BGIv1.0 annot-version=v1.0 ATGGACGGACGACCTATTCTTCTCCCCTTCGCCATCGCCGTGCTATTAGTCGCCGGTCTTGGAACCACCAATGGCGTCGAGTTCGACGGAGACTACTCCA AGCTTTCAGGGATCATAATCCCTGGATTTGCATCCACTCAGCTCAGAGCATGGTCATTGCTCGACTGTCCTTACTCGCCTCTCGATTTCAACCCTCTCGA CTTGGTCTGGCTCGACACTACCAAGCTTCTATCTGCGGTGAATTGCTGGCTCAAGTGCATGTTGCTAGATCCTTACAACCAAACTGATCATGCGGAGTGT AAGTCAAGGCCTGATAGTGGTCTCTCTGCAATCACTGAACTCGATCCAGGATATATTACAGGTCCACTTTCATCAATATGGAAAGAATGGATTAAGTGGT GCATCCAATTCGGTATCGAGGCAAATGCGATAATTGCTGTTCCATATGATTGGAGAATGTCACCATCAATGCTTGAGGAGCGAGACCTCTATTTTCATAG CCTCAAATTGACCTTTGAAACAGCCCTCAAACTTCGTGGTGGGCCGTCTTTGGTATTTGGTCATTCATTGGGGAACCTTGTATTCCGATATTTTCTAGAG TGGCTGAAGCTAGAAATTGCTCCGAAACACTACAATCAATGGCTGGATGACCACATTCATGCTTACTTTGCTGTTGGAGCTCCTCTTCTTGGTTCGCCCG AGACAGTGAAAGCTTCTCTTTTTGGAAACACATTTGGTCTTCCTGTTTCTGAGGGAACAGCTCGATTAATGTTCAATTCTTTTGCTTCATCGTTGTGGAT GTTGCCTCTTTCAAAGTATTGTAGATCTGACAATCCATATTGGAAATATTTTTCTGGAGGATTCAGAATGAATAATGACACGTATAATTGTGAGGAGAAA GAATATCAATCCAACTACTCTGGGTGGCCGACCAACGTGGTCAATATTGAAATCCCTTCTGTCCCTGGTTTTGATGCCTATCCATCACTCTCAGATATGG TTGAAACAAACTTCTCTGGAATGGAGTGTGGACTCCCTACTCAGCTATCTTTCTCAGCTCGTGAAGTTGCTGATGGAACGCTTTTCAGAGCCATAGAGGA TTATGATTCGGACAGCAAGAGGCTTTTATACCAGTTACAGAAGGCATACCATGGCGATCCTGTTGTGAATCCTCTTACCCCCTGGGACCGGCCTCCAATT AAAAATATTTTCTGCATATATGGAGTAGATTTAAAGACAGAGGTTGGTTACTATTTTGCACCAAGTGGCAAGCCTTACCCAGATAATTGGATCATAACAG ATGTTATTTATGAAATTGAAGGATCCCTCTACACAAGGCATAAGAATGTATTTTCCCCTTATTGGATTAAGTCTGGGAATCTAGTCGAAGGGAATCCAGG AGCTACGAGTGGGGATGAGACGGTACCATACAATTCCTTATCTCTATGCAAGAGTTGGCTTGGACCAAAAGTCAACATAACAAGGGCTCCCCAGTCCGAA CATGATGGATCTGATGTACAAATCGAACTGAATGTCGACCATCACCCGGAAGAAGATATAGTTCCCAACATGGCAAGATCTCCGAGGGTAAAATATATTA CATATTATGAAGATTCTGAGAGCCTCGCAGGAAAGAGGACTGCAGTTTGGGAACTTGATAAAGCAAATCACAGGAACATTGTAAGATCTCCCGTTTTAAT GCGGGAGTTGTGGCTTCAGATGTGGCATGACCTCCATTCAGATAAAACATCAAAATTTGTTACGAAATCTAAGCGAGGTCCCCTAAGAGACGATGATTGC TATTGGGACTACGGCAAAGCTCGGTGTGCGTGGTCTGAATACTGCGAATATAGATACCTTTTCGGTGATGTTCACTTAGGACAGAGCTGTAGACTGAAGA ATTCTTCGGCTCAGACGCTCTTGAATTACCTGTAA
AA sequence Show only first row Show all	>Lus10003615 pacid=23159161 polypeptide=Lus10003615 locus=Lus10003615.g ID=Lus10003615.BGIv1.0 annot-version=v1.0 MDGRPILLPFAIAVLLVAGLGTTNGVEFDGDYSKLSGIIIPGFASTQLRAWSLLDCPYSPLDFNPLDLVWLDTTKLLSAVNCWLKCMLLDPYNQTDHAEC KSRPDSGLSAITELDPGYITGPLSSIWKEWIKWCIQFGIEANAIIAVPYDWRMSPSMLEERDLYFHSLKLTFETALKLRGGPSLVFGHSLGNLVFRYFLE WLKLEIAPKHYNQWLDDHIHAYFAVGAPLLGSPETVKASLFGNTFGLPVSEGTARLMFNSFASSLWMLPLSKYCRSDNPYWKYFSGGFRMNNDTYNCEEK EYQSNYSGWPTNVVNIEIPSVPGFDAYPSLSDMVETNFSGMECGLPTQLSFSAREVADGTLFRAIEDYDSDSKRLLYQLQKAYHGDPVVNPLTPWDRPPI KNIFCIYGVDLKTEVGYYFAPSGKPYPDNWIITDVIYEIEGSLYTRHKNVFSPYWIKSGNLVEGNPGATSGDETVPYNSLSLCKSWLGPKVNITRAPQSE HDGSDVQIELNVDHHPEEDIVPNMARSPRVKYITYYEDSESLAGKRTAVWELDKANHRNIVRSPVLMRELWLQMWHDLHSDKTSKFVTKSKRGPLRDDDC YWDYGKARCAWSEYCEYRYLFGDVHLGQSCRLKNSSAQTLLNYL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04010		ATPSAT1	phospholipid sterol acyl trans...		Lus10003615 [exp]	0	1
AT4G23440			Disease resistance protein (TI...		Lus10024640 [exp]	3.2	0.8163
AT4G24790			AAA-type ATPase family protein...		Lus10013665 [exp]	6.7	0.8288
AT3G21290			dentin sialophosphoprotein-rel...		Lus10037611 [exp]	7.5	0.8045
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Lus10022923 [exp]	9.5	0.8082
AT3G57000			nucleolar essential protein-re...		Lus10032054 [exp]	12.6	0.8134
					Lus10007709 [exp]	15.3	0.6849
AT5G15550			Transducin/WD40 repeat-like su...		Lus10037439 [exp]	15.7	0.7990
AT2G39090		APC7, AtAPC7	anaphase-promoting complex 7, ...		Lus10043419 [exp]	19.2	0.7326
AT4G37280			MRG family protein (.1)		Lus10019311 [exp]	25.8	0.6996
AT4G00830		LIF2	LHP1-Interacting Factor 2, RNA...		Lus10030207 [exp]	26.3	0.7308

Compare expression of checked genes

Lus10003615 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.