Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003616 pacid=23159174 polypeptide=Lus10003616 locus=Lus10003616.g ID=Lus10003616.BGIv1.0 annot-version=v1.0 ATGCGCACCAATCAAATGTTTGCTGCTAATGATGAAGAAGAAGAGGAAGATGGTGCTAGTAACATTAATGGGATAATTCCTCCTACTCTCCTTTCCCTCA AGCAACAGCTTCACAAAGACAAGGATGATGCCAGCTCACTTTCACTGTTCTTCACAGCATCCTCTCTGGCCTCACCTACTCCAACACTGTTTGGAAGTCA GGAATTCAAGGTAACCCCTCTGCCCCAGGTTCAACTCTACTGTACTTGTTATCAATCGATACTCATGCTTGGTGGTTGGTTGCTCTTCGCGGAGGTTGGC CAATTCACCGGTCTGATACATCCAGGTTTGCTGGGAAACGTCGATTTAACTGGTTGA
AA sequence Show only first row Show all	>Lus10003616 pacid=23159174 polypeptide=Lus10003616 locus=Lus10003616.g ID=Lus10003616.BGIv1.0 annot-version=v1.0 MRTNQMFAANDEEEEEDGASNINGIIPPTLLSLKQQLHKDKDDASSLSLFFTASSLASPTPTLFGSQEFKVTPLPQVQLYCTCYQSILMLGGWLLFAEVG QFTGLIHPGLLGNVDLTG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10003616 [exp]	0	1
					Lus10027034 [exp]	5.1	0.8675
AT1G66240		ATX1, ATATX1	homolog of anti-oxidant 1 (.1....		Lus10034138 [exp]	7.7	0.8631
					Lus10029977 [exp]	11.0	0.8704
AT1G21240		WAK3	wall associated kinase 3 (.1)		Lus10013387 [exp]	15.0	0.8613
AT5G02530			RNA-binding (RRM/RBD/RNP motif...		Lus10005895 [exp]	18.6	0.8507
AT4G10925			Nuclear transport factor 2 (NT...		Lus10003192 [exp]	19.3	0.7756
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10008836 [exp]	22.2	0.8234
AT5G63130			Octicosapeptide/Phox/Bem1p fam...		Lus10017947 [exp]	26.9	0.8369
					Lus10000510 [exp]	27.3	0.8266
AT1G70670		AtCLO4	Arabidopsis thaliana caleosin ...		Lus10041446 [exp]	32.8	0.8184

Compare expression of checked genes

Lus10003616 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.