Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01150 63 / 6e-13 RHA2B RING-H2 finger protein 2B (.1) AT1G15100 63 / 6e-13 RHA2A RING-H2 finger A2A (.1) AT5G20885 59 / 5e-11 RING/U-box superfamily protein (.1) AT5G01880 58 / 5e-11 RING/U-box superfamily protein (.1) AT3G62690 59 / 1e-10 ATL5 AtL5 (.1) AT3G10910 57 / 1e-10 RING/U-box superfamily protein (.1) AT1G63840 57 / 2e-10 RING/U-box superfamily protein (.1) AT3G60966 55 / 4e-10 RING/U-box superfamily protein (.1) AT4G00305 54 / 8e-10 RING/U-box superfamily protein (.1) AT3G19950 56 / 1e-09 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008235 [exp] 207 / 4e-69 AT5G20885 61 / 5e-12 RING/U-box superfamily protein (.1) Lus10019686 [exp] 102 / 7e-28 AT1G72310 62 / 1e-11 RING/U-box superfamily protein (.1) Lus10016427 [exp] 95 / 1e-24 AT1G72310 59 / 4e-11 RING/U-box superfamily protein (.1) Lus10016428 [exp] 90 / 4e-23 AT5G45290 59 / 2e-11 RING/U-box superfamily protein (.1.2) Lus10019685 [exp] 81 / 1e-19 AT5G43200 62 / 4e-12 Zinc finger, C3HC4 type (RING finger) family protein (.1) Lus10008972 [exp] 62 / 2e-12 AT5G06490 76 / 2e-17 RING/U-box superfamily protein (.1) Lus10013475 [exp] 62 / 3e-12 AT2G01150 104 / 2e-29 RING-H2 finger protein 2B (.1) Lus10007936 [exp] 61 / 3e-12 AT2G01150 104 / 3e-29 RING-H2 finger protein 2B (.1) Lus10016163 [exp] 61 / 9e-12 AT2G27940 133 / 1e-38 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G086100 [exp] 77 / 6e-18 AT2G01150 71 / 3e-16 RING-H2 finger protein 2B (.1) Potri.007G086300 [exp] 75 / 2e-17 AT1G15100 79 / 5e-19 RING-H2 finger A2A (.1) Potri.005G081200 [exp] 72 / 3e-16 AT1G15100 74 / 3e-17 RING-H2 finger A2A (.1) Potri.005G081300 [exp] 67 / 2e-14 AT2G01150 75 / 1e-17 RING-H2 finger protein 2B (.1) Potri.007G086200 [exp] 64 / 2e-13 AT1G15100 74 / 5e-17 RING-H2 finger A2A (.1) Potri.005G113200 [exp] 60 / 2e-11 AT2G17450 66 / 2e-13 RING-H2 finger A3A (.1) Potri.010G133300 [exp] 59 / 2e-11 AT3G61460 69 / 2e-15 brassinosteroid-responsive RING-H2 (.1) Potri.010G133200 [exp] 58 / 3e-11 AT3G61460 69 / 3e-15 brassinosteroid-responsive RING-H2 (.1) Potri.013G157000 [exp] 59 / 4e-11 AT3G10910 114 / 1e-32 RING/U-box superfamily protein (.1) Potri.019G130100 [exp] 57 / 3e-10 AT5G05280 129 / 5e-38 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10003617 pacid=23159176 polypeptide=Lus10003617 locus=Lus10003617.g ID=Lus10003617.BGIv1.0 annot-version=v1.0 ATGGCGACACAAATAGTCTCAGATCTATACACCGTAGCCTTCTTCTTCTTCAAGCTCCTCCTCCTCAAAATCCGGGTCGTCATCCGCTCCGCCTCCTCCG GACTGCAGATTAATAAGACCCAGTTCCGCCACACCCTGCTCGGATCCATCGAAGACAAGTACCCAACGACTCTGTACTACTCGTCGGAGAACCCGGCGGA GGAATGCGCGGTGTGTTTGTCGGAATTCAAGGAAGGGGAACTCGTGAGGCGGTTGAGTTGCAAGCATCTGTTCCACAGGGAGTGCGTGGACGAATGGGTA ATGATGAGGAGGGGGAGGACGGAGGGGGGTAATTACGGGTTTTCATCATCGTGCCCTCTGTGCCGGAGCCAGCTGGTGGTTGTTGCCCCACCGCGGCCGG CGGGCGATTGTGGGAGTAGTGATCAGTGGGGACATCAGCAGCTGTTGGTTTTGTTGGCTGCGTTCCGACGAGACGAGGCGGTGGTTCCGAGGTCGACGGA GATTACTACTAGCTAG
AA sequence Show only first row Show all	>Lus10003617 pacid=23159176 polypeptide=Lus10003617 locus=Lus10003617.g ID=Lus10003617.BGIv1.0 annot-version=v1.0 MATQIVSDLYTVAFFFFKLLLLKIRVVIRSASSGLQINKTQFRHTLLGSIEDKYPTTLYYSSENPAEECAVCLSEFKEGELVRRLSCKHLFHRECVDEWV MMRRGRTEGGNYGFSSSCPLCRSQLVVVAPPRPAGDCGSSDQWGHQQLLVLLAAFRRDEAVVPRSTEITTS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01150		RHA2B	RING-H2 finger protein 2B (.1)		Lus10003617 [exp]	0	1
AT5G27260			unknown protein		Lus10035759 [exp]	1.4	0.7772
AT2G38025			Cysteine proteinases superfami...		Lus10035535 [exp]	2.4	0.7675
AT1G48745			unknown protein		Lus10013499 [exp]	3.7	0.7069
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Lus10016286 [exp]	4.6	0.6937
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10010185 [exp]	14.5	0.7208
					Lus10008493 [exp]	15.6	0.6919
AT1G53530			Peptidase S24/S26A/S26B/S26C f...		Lus10015272 [exp]	15.9	0.7378
AT1G55170			unknown protein		Lus10034321 [exp]	16.4	0.7527
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Lus10011443 [exp]	16.4	0.7522
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10016498 [exp]	17.6	0.6834

Compare expression of checked genes

Lus10003617 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.