Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28600 669 / 0 NPGR2 no pollen germination related 2 (.1) AT2G43040 467 / 5e-155 NPG1 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) AT1G27460 418 / 3e-136 NPGR1 no pollen germination related 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008236 [exp] 1330 / 0 AT4G28600 738 / 0.0 no pollen germination related 2 (.1) Lus10022897 [exp] 908 / 0 AT4G28600 736 / 0.0 no pollen germination related 2 (.1) Lus10024926 [exp] 893 / 0 AT4G28600 726 / 0.0 no pollen germination related 2 (.1) Lus10011793 [exp] 679 / 0 AT4G28600 751 / 0.0 no pollen germination related 2 (.1) Lus10023748 [exp] 678 / 0 AT4G28600 753 / 0.0 no pollen germination related 2 (.1) Lus10029803 [exp] 454 / 4e-150 AT2G43040 934 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10020725 [exp] 454 / 4e-150 AT2G43040 934 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10017638 [exp] 449 / 1e-148 AT2G43040 929 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10033595 [exp] 448 / 5e-148 AT2G43040 926 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G259300 [exp] 837 / 0 AT4G28600 751 / 0.0 no pollen germination related 2 (.1) Potri.008G169500 [exp] 714 / 0 AT4G28600 699 / 0.0 no pollen germination related 2 (.1) Potri.010G068700 [exp] 693 / 0 AT4G28600 708 / 0.0 no pollen germination related 2 (.1) Potri.002G055200 [exp] 484 / 7e-162 AT2G43040 1035 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.014G016000 [exp] 435 / 1e-142 AT1G27460 841 / 0.0 no pollen germination related 1 (.1) Potri.002G118500 [exp] 425 / 1e-138 AT1G27460 868 / 0.0 no pollen germination related 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003618 pacid=23159157 polypeptide=Lus10003618 locus=Lus10003618.g ID=Lus10003618.BGIv1.0 annot-version=v1.0 ATGAGTAGAAATCATAAGCGGGCGGTTAGGAGAGATTTGAGGAATATGATGAAGTGTTTCTGCTCGGGAGAGCAACTAGTTACAGCAGATGAATTGGGAC CCCAAGGACAAGGAGGAAGAGAATCTGGTTCTCTTACAGACAGGTTTTACTCTGCAACGAGTGCTCGCTCATCTAGAGGTAGCAAAAGTGGTAGCCATAA ACCAGATCGCACTAACATAGAGGAAGCTGAATTATCTCTCCAGAAGCGTGGCTCCTTGAACAATGAGGAAGCTAGAGCATTGTTGGGGAGAGTTGAGTAT CAGCAAGGAAATTTTGAATCCGCGTTACATGTATTTGAAGGCATCAATGTTTCTGCAATCACTCCCAAAGTCAAGTTTAGTCTTGCTAGACACGGTGATC AACTTAGAAGGCAGTCCCAGGACTCGGTGAAATCTCCGCTGTCTATACAGGCTGTCACCTTGCTGTTGGAAGCACTCTTTCTGAAAGCAAAATCCTTGCA GCATCTCGGGAGTTTTCGTGAAGCTGCTGAATCTTGCAAAGCACTTGTGGACATAGTTGAATCTTCCTTGCCAGAAGGTTTGCCTAGAAACTTTACTGCT GACGGTAAATTCCACGAAATTGTAAGCAAGGCTGTTGAGTTGCTTCCAGAGTTATCGAAACATGCAGATAACTCGCATGATACGATAGTGGCCTTCCGGA GGGCACTCCTTCATCGTTGGAACCTTGATGTCCAAACCACAGCAAGGATCCAAAGGGAGTTTGCAATCTTCCTTCTCTACAATGGCGGGGAAGCGAGTCC TCCAAACCTGCGCTTCCAGATGGATGGTTCTTTCGTGCCAAGAAATAATCTAGAAGAGGCCATACTGTTACTCATGATACTTTTAAGACAAACATCACTC AAGAAAATTGAATGGGACCCATCAATCTTGGACCATCTTCAATTTGCTCTCTCAGTGTCAGGGGATCTCTTAACATTAGGCAACCACATTGAGATGTTGC CACTGGGAATAATTAGTCAGAAGGAAATGTACTATAATCTCACGCTCTGTTATTACCATGAAGGGGAAGAACTGGTAGCTCTAAATCTACTCAAGAAGCT ATTGCACAGCAGTGTAGATCCAAATTACGTTCCCGGTTTGCTAATGGCGTCTAAGATTTGCGGAACAACACCTCAGCTTGCATCAGAAGGAATCGATTAT GCTCGTAGAGCTCTCAAAAGTTCCGAAAATGGATGCCATCAGTTAGAAAGTACCGCCAATCTTCTGTTGGGAATATCCCTTTCCTCTTGTTCAAGGTCAA CTTTTGCAGACTCTGATAGGGTCTCCAAACAGTCTGAATCACTAAAAGTCCTCGAAAGCGCTGCAAAAACGACGAATATGGAACGTGCTGATATTCTGTA CCATCTTAGCCTAGAAAATGCAGAGCAGAGGAAGTTGGATCATGCACTTGATTACGCAAAGAGGTGTTTAAAATGCGAAACTGGTTCTAGCATCCAAGGA TGGTTGCTTTTGGCACGGATCTTTTCAGCTCAGAAATGCTATTCTGATGCTGAAAATGTCATCACTGCTGCATTGGACCAGACTAGTAAATGGGATCAAG GAGAGCTTTTGAGAACTAAAGCTAAAATTCAGGTTGCGCGATGCCAAATCAAGAACGCCATTCAAACTTATACCCAACTTCTAGCTGTTCTTCAAGTTCA GACCAAGATCTTTGGCACCGGAAAGAAACTACAAAAGACCGATGGAGTTCCTGCTAGAGCATTGGAATTGGAAATTTGGCATGATTTGGCCTCTCTATAC ATAAGCCTATCGCGGTGGCATGATGCCGAGGTCTGCCTTTTGAAATCGAAAGCCATCCAGTCTTTCTCAGCCCCTCGATGTCATATCGTAGGAAGCCTAT ACGAAAAGAAAGGACTCCTGAAGGAAGCACTGAAGGCGTTCATAGCAGCGTTGAGCATCGACCCAGTCCATGTGGCGAGCTTAGTGTCGACAGCAGTTGT TCTTAGGAAGCTAGGCGGCACATCGAACGAGGTACTGAGAAGCTTTTTAATGGGGGCTCTACGGATCGACAGGATGAATGTAACGGCCTGGTACAGCCTT GGTTTGGTTCAGAAAGACGAGGGATCGCCTTCCTCACTGATGGAAGCGGCCGATTGCTTTGAAGCTGCCACCTTTCTTGAAGAAACAGAACCAGTTGAAC CTTTTCAGATGAGATGA
AA sequence Show only first row Show all	>Lus10003618 pacid=23159157 polypeptide=Lus10003618 locus=Lus10003618.g ID=Lus10003618.BGIv1.0 annot-version=v1.0 MSRNHKRAVRRDLRNMMKCFCSGEQLVTADELGPQGQGGRESGSLTDRFYSATSARSSRGSKSGSHKPDRTNIEEAELSLQKRGSLNNEEARALLGRVEY QQGNFESALHVFEGINVSAITPKVKFSLARHGDQLRRQSQDSVKSPLSIQAVTLLLEALFLKAKSLQHLGSFREAAESCKALVDIVESSLPEGLPRNFTA DGKFHEIVSKAVELLPELSKHADNSHDTIVAFRRALLHRWNLDVQTTARIQREFAIFLLYNGGEASPPNLRFQMDGSFVPRNNLEEAILLLMILLRQTSL KKIEWDPSILDHLQFALSVSGDLLTLGNHIEMLPLGIISQKEMYYNLTLCYYHEGEELVALNLLKKLLHSSVDPNYVPGLLMASKICGTTPQLASEGIDY ARRALKSSENGCHQLESTANLLLGISLSSCSRSTFADSDRVSKQSESLKVLESAAKTTNMERADILYHLSLENAEQRKLDHALDYAKRCLKCETGSSIQG WLLLARIFSAQKCYSDAENVITAALDQTSKWDQGELLRTKAKIQVARCQIKNAIQTYTQLLAVLQVQTKIFGTGKKLQKTDGVPARALELEIWHDLASLY ISLSRWHDAEVCLLKSKAIQSFSAPRCHIVGSLYEKKGLLKEALKAFIAALSIDPVHVASLVSTAVVLRKLGGTSNEVLRSFLMGALRIDRMNVTAWYSL GLVQKDEGSPSSLMEAADCFEAATFLEETEPVEPFQMR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28600		NPGR2	no pollen germination related ...		Lus10003618 [exp]	0	1
AT4G28600		NPGR2	no pollen germination related ...		Lus10008236 [exp]	1.0	0.9569
AT1G12360		KEU	keule, Sec1/munc18-like (SM) p...		Lus10024558 [exp]	5.7	0.9132
AT1G19310			RING/U-box superfamily protein...		Lus10016303 [exp]	6.1	0.8729
AT1G32230		ATP8, CEO1, RCD...	RADICAL-INDUCED CELL DEATH1, A...		Lus10030991 [exp]	6.2	0.9257
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Lus10027600 [exp]	9.2	0.9053
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Lus10013374 [exp]	10.5	0.8937
AT3G62240	C2H2ZnF		RING/U-box superfamily protein...		Lus10010069 [exp]	11.8	0.8559
AT1G12360		KEU	keule, Sec1/munc18-like (SM) p...		Lus10032196 [exp]	12.4	0.8958
AT1G13570			F-box/RNI-like superfamily pro...		Lus10030920 [exp]	13.1	0.9082
AT1G71090			Auxin efflux carrier family pr...		Lus10036001 [exp]	14.1	0.8952

Compare expression of checked genes

Lus10003618 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.