Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04000 100 / 1e-27 unknown protein AT5G44060 100 / 1e-27 unknown protein AT3G23440 73 / 2e-17 EDA6, MEE37 MATERNAL EFFECT EMBRYO ARREST 37, embryo sac development arrest 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008237 [exp] 159 / 4e-51 AT1G04000 79 / 2e-19 unknown protein Lus10011797 [exp] 84 / 3e-21 AT5G44060 85 / 1e-21 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G259400 [exp] 103 / 6e-29 AT1G04000 87 / 2e-22 unknown protein Potri.010G068800 [exp] 96 / 3e-26 AT3G23440 94 / 5e-26 MATERNAL EFFECT EMBRYO ARREST 37, embryo sac development arrest 6 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003619 pacid=23159164 polypeptide=Lus10003619 locus=Lus10003619.g ID=Lus10003619.BGIv1.0 annot-version=v1.0 ATGATCCCTCCTCCGACTCTTACAAGCCGCCGACACCCGCGGCTCCACCTCCGCCGCCGTCTGCCACATAGAAGCCGAGTGAAGCCACTGGGTAAGCCGG TTATCGGTCCGACCGGTTCGGATAAATTGGTCGAACCGGTCGGGTCTAATAATCAGATTCTAGCCGGTTACTTAGCCCACGAGTTTCTCACAAAGGGCAC ACTCCTGGGTCAACAGTGGGACCCAAAAGAGAGCCTGCCCGTGCCCTCCTCCGTAACCCTAGAAGGGAAGAAGCTGAAGCCGAGCCAGAGAGGGACTGCC GCCGCTGAGCCGATGATTGAGAAGATGAGAGAGAGGTACGTGGAGGTTTCGAAATTGCTGAAGACGAAAGGGGCCCACTTGCCGGGCATTGTTAACCCTA CCCAGCTTGCCCGCTTCTTACAAATGTGA
AA sequence Show only first row Show all	>Lus10003619 pacid=23159164 polypeptide=Lus10003619 locus=Lus10003619.g ID=Lus10003619.BGIv1.0 annot-version=v1.0 MIPPPTLTSRRHPRLHLRRRLPHRSRVKPLGKPVIGPTGSDKLVEPVGSNNQILAGYLAHEFLTKGTLLGQQWDPKESLPVPSSVTLEGKKLKPSQRGTA AAEPMIEKMRERYVEVSKLLKTKGAHLPGIVNPTQLARFLQM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44060			unknown protein		Lus10003619 [exp]	0	1
AT1G80310		MOT2	molybdate transporter 2, sulfa...		Lus10038286 [exp]	1.0	0.9009
AT1G04000			unknown protein		Lus10008237 [exp]	5.7	0.8637
AT5G67020			unknown protein		Lus10019345 [exp]	6.2	0.8974
AT1G56430		ATNAS4	ARABIDOPSIS THALIANA NICOTIANA...		Lus10020696 [exp]	9.4	0.8674
AT1G70780			unknown protein		Lus10034416 [exp]	10.1	0.8279
AT3G52105			unknown protein		Lus10012208 [exp]	10.1	0.8732
AT1G03350			BSD domain-containing protein ...		Lus10029636 [exp]	10.5	0.8750
AT1G65720			unknown protein		Lus10031363 [exp]	11.0	0.8866
AT2G20690			lumazine-binding family protei...		Lus10021323 [exp]	11.3	0.8294
AT1G75390	bZIP	ATBZIP44	basic leucine-zipper 44 (.1.2)		Lus10040428 [exp]	11.7	0.8882

Compare expression of checked genes

Lus10003619 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.