Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20420 763 / 0 ATP citrate lyase (ACL) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008238 [exp] 846 / 0 AT2G20420 766 / 0.0 ATP citrate lyase (ACL) family protein (.1) Lus10022902 [exp] 202 / 1e-64 AT2G20420 196 / 8e-63 ATP citrate lyase (ACL) family protein (.1) Lus10024923 [exp] 184 / 2e-57 AT2G20420 176 / 3e-55 ATP citrate lyase (ACL) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G259600 [exp] 776 / 0 AT2G20420 741 / 0.0 ATP citrate lyase (ACL) family protein (.1) Potri.014G195700 [exp] 761 / 0 AT2G20420 745 / 0.0 ATP citrate lyase (ACL) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0506 [flax] [poplar] Succ_CoA_synth PF00549 [flax] [poplar] Ligase_CoA CoA-ligase CL0179 [flax] [poplar] ATP-grasp PF08442 [flax] [poplar] ATP-grasp_2 ATP-grasp domain
Representative CDS sequence Show only first row Show all	>Lus10003620 pacid=23159180 polypeptide=Lus10003620 locus=Lus10003620.g ID=Lus10003620.BGIv1.0 annot-version=v1.0 ATGAGGGGAACGCTAAACAAACTGGTCTCCCGTTCTCTCTCCGTCGCCGGAAAATGGCAGCAGCAGCAGCTCCGCCGTCTCAATGTCCACGAATATCAGG GAGCTGAATTGATGGGCAAACACGGGATCAATGTCCCAAGAGGTGTAGCTGTTTCTTCTCTTGAGGAGGTCAAGAAGGCAATTCAAGATGTGTTTCCTAA CCAGAGCGAGATAGTTGTTAAGAGCCAAATTTTGGCTGGTGGTCGGGGCTTTGGGGCATTCAAAAATGGGCTTCAGGGTGGAGTTCACATTGTTAAGAGC GACAAGGTCGAAGACCTTGCTGGGAAAATGCTGGGGGAAATACTTGTAACAAAGCAAACTGGCCCTGAAGGAAAAGTTGTTAGCAAGGTTTACTTGTGTG AAAAGTTATCTCTTGTCAATGAAATGTACTTCGCTATCATGTTGGATCGTCAAACTTCTGGTCCACTTATTATTGCCTGTAAGAAGGGTGGAACCAGCAT TGAAGATCTTGCAGAGAAATTCCCTGACTTGATTATTAAGGTGCCTATTGATGTTTTCACTGGAATTACTGATGAAGATGCGGCTAAAGTTGTGGATGGA TTGGCCCCAAAATCAGCAGATAGAAATGATTGCATTGAGCAAGTGAAGAAATTGTATAAACTTTTCTGTGATAGTGACTGCACATTGTTGGAAATCAATC CTATTGCAGAAACTTCTGATAACAAATTGGTAGCAGCGGATGCTAAGCTGAACTTTGATGATAATGCTGCTTTCCGCCAGAAGGAGTTATTTGCACTCCG TGATCCAACACAGGAGGACCCTCGTGAGGTTGCTGCTGCTAAGGCAGATTTGAATTACATCGGGCTAGATGGCGAGATTGGCTGCATGGTGAATGGTGCA GGGTTGGCTATGGCCACTATGGATATTATTAAACTGCACGGCGGTACTCCTGCCAATTTTCTGGATGTTGGTGGAAATGCTTCTGAAGGCCAGGTGGTTG AAGCGTTCAAGATATTGACTTCTGATGAGAAAGTTAAGGCAATCCTGGTAAACATATTTGGAGGAATTATGAAGTGTGACGTTATAGCAAGTGGAATTGT CAATGCCGCAAAACAGGTTTCACTTAAAGTGCCTGTCGTGGTCCGTCTGGAAGGCACTAATGTCGATCAAGGAAAAAGGATTCTCAAGGAGAGTGGGATG GCACTGATTACGGCTGAAGACTTGGACGATGCTGCTGAGAAAGCAGTGAAGGCGTTATCTAGTTGA
AA sequence Show only first row Show all	>Lus10003620 pacid=23159180 polypeptide=Lus10003620 locus=Lus10003620.g ID=Lus10003620.BGIv1.0 annot-version=v1.0 MRGTLNKLVSRSLSVAGKWQQQQLRRLNVHEYQGAELMGKHGINVPRGVAVSSLEEVKKAIQDVFPNQSEIVVKSQILAGGRGFGAFKNGLQGGVHIVKS DKVEDLAGKMLGEILVTKQTGPEGKVVSKVYLCEKLSLVNEMYFAIMLDRQTSGPLIIACKKGGTSIEDLAEKFPDLIIKVPIDVFTGITDEDAAKVVDG LAPKSADRNDCIEQVKKLYKLFCDSDCTLLEINPIAETSDNKLVAADAKLNFDDNAAFRQKELFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGA GLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSLKVPVVVRLEGTNVDQGKRILKESGM ALITAEDLDDAAEKAVKALSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20420			ATP citrate lyase (ACL) family...		Lus10003620 [exp]	0	1
AT2G20420			ATP citrate lyase (ACL) family...		Lus10008238 [exp]	1.0	0.9620
AT1G51980			Insulinase (Peptidase family M...		Lus10038262 [exp]	2.0	0.9584
AT5G08570			Pyruvate kinase family protein...		Lus10010159 [exp]	4.2	0.9484
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10040992 [exp]	5.7	0.9538
AT2G36460			Aldolase superfamily protein (...		Lus10023870 [exp]	7.2	0.9515
AT1G19580		GAMMACA1 ,GAMMA...	gamma carbonic anhydrase 1 (.1...		Lus10041768 [exp]	7.5	0.9454
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10013271 [exp]	8.0	0.9434
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Lus10004938 [exp]	9.2	0.9488
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10011539 [exp]	12.0	0.9378
AT4G38630		ATMCB1, MBP1, A...	MULTIUBIQUITIN-CHAIN-BINDING P...		Lus10034493 [exp]	14.7	0.9119

Compare expression of checked genes

Lus10003620 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.