Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28570 842 / 0 Long-chain fatty alcohol dehydrogenase family protein (.1) AT3G23410 800 / 0 ATFAO3 ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, fatty alcohol oxidase 3 (.1) AT1G03990 741 / 0 Long-chain fatty alcohol dehydrogenase family protein (.1) AT4G19380 508 / 1e-170 Long-chain fatty alcohol dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008239 [exp] 1439 / 0 AT4G28570 852 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10022903 [exp] 1036 / 0 AT4G28570 837 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10024922 [exp] 1029 / 0 AT4G28570 833 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10035673 [exp] 537 / 0 AT4G19380 793 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10011800 [exp] 511 / 2e-176 AT3G23410 527 / 0.0 ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, fatty alcohol oxidase 3 (.1) Lus10037257 [exp] 515 / 1e-173 AT4G19380 765 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10021165 [exp] 147 / 5e-40 AT4G28570 148 / 8e-41 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10011801 [exp] 0 / 1 AT4G28570 243 / 3e-74 Long-chain fatty alcohol dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G069100 [exp] 831 / 0 AT3G23410 851 / 0.0 ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, fatty alcohol oxidase 3 (.1) Potri.008G169300 [exp] 804 / 0 AT3G23410 855 / 0.0 ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, fatty alcohol oxidase 3 (.1) Potri.004G234900 [exp] 510 / 3e-170 AT4G19380 864 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Potri.002G259700 [exp] 376 / 1e-121 AT1G03990 300 / 5e-93 Long-chain fatty alcohol dehydrogenase family protein (.1) Potri.006G210150 [exp] 47 / 6e-05 AT4G28570 51 / 4e-06 Long-chain fatty alcohol dehydrogenase family protein (.1) Potri.006G210325 [exp] 47 / 7e-05 AT1G03990 67 / 4e-11 Long-chain fatty alcohol dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05199 [flax] [poplar] GMC_oxred_C GMC oxidoreductase CL0063 [flax] [poplar] NADP_Rossmann PF00732 [flax] [poplar] GMC_oxred_N GMC oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10003621 pacid=23159175 polypeptide=Lus10003621 locus=Lus10003621.g ID=Lus10003621.BGIv1.0 annot-version=v1.0 ATGAAGGAAACAATGGAGGGAAAAACAGAGATTTGTCAGCCACATACCTTACTGAGAGGAAGCAGTAGTTCTTACAGCCATGGATTCAGTCCTGATCAGA TGAAATCACTTTCAGCTATCTGTGAAGCCTTTTTACCTCCATTGACACTCTCAGAAAAAGATGGAATCCTGAAAGGAATCCCATTTGAGAGGCAGCAAGC TCTTCTTTCCTTCTGTGAAGCTTCTGGCTCTGACGCACCAATTCCTGACGAAGTGGCAGAACTAATGGTGAAGAGAAACACCCCAGAAGGAGTGTTGCTA ATGAAGCTAGCTTTCAAGCTCCTCTCTTCCAGATTTGGAACACTGTTGCTTGCTGGGGTTTCTAGTCTGGACTGGAAATGGCCATTCATCCACAACTTCT CTGAACTCCCTCTGGAGAAGCGAGAACAAATTCTCAGGAAATGGAGAGGAGAGAAATTGTTCACACCTCTCAGAGTAGTTTTCGCCATGACCAAAGTCTT CTCCTTGTTCGTCTTCTTTTCCAGGATTGATGAAACTCTCAAGAATCCAGCTTGGGAAGCAATTGGATATCGAGTAGATGACGCCAGGAAAATTACAAGC AAACGAAAGGGAGAGAGACCTCTAGAGAAAGGGATAGTGGAGACAATTCATCAAGATGATTATACGAGTTTGATCCAATCACTTGTCGAAAAGGGCGTTC AGGTCACTGAAGATCGAGACCAGGACACCCTTAAGATAAGATGTGATGCTGTAATTGTCGGATCAGGTTGCGGTGGAGGTGTTGCAGCTGCAATCCTTGC AAGTTCAGGATTGAAAGTGATTGTCTTGGAGAAAGGAAACTACTTTACCTCTGAGGACTACTCCTTACTCGAAGGGCCTTCGTTGGAGGAGCTATACGAG TGTGGAGGGAAAATGTCGACTAGTAACGGGGAGACCTCGATCTTAGCTGGATCGACAGTAGGTGGGGGAACTGCTGTGAACTGGTCTGCATGCATCAAGA CTCCCGATTCTGTTCTCAGAGATTGGTCTGAGGATCACAAGCTTCCACTTTTCGGAAGCTTGGAGTACCGAGAAGCTGTGGAAGCTGTGTGGAAGAGAAT TGGGGTGACGGATAACTGTAAAGAGGAAGGGTTCCAGAACCAGGTCCTCAGGAAAGGCTGCGAGAATCTCGGTCTGAAAGTCGAACCTGTGTCGAGGAAT TCGTCTGAAGATCATTACTGTGGATCGTGCAGCTATGGATGCAGAACAGGAGACAAGAGAGGGACTGACACAACGTGGCTGGTTGATGCCGTGAAGAACG ATGCTGTGATCATAACAGGATGCAAAGCCGAGCAATTCGTATTGGCAGATGATGATGGCGGAAGGAAGAAGAGATGCTTGGGAGTGGTTGCTAGATCTTT GAACCCGAAGCTCGAGAAGAAGAAGCTGCATATCGAAGCTCAAGTGACAGTTTCAGCTGGTGGGGCTCTTTTGACGCCTCCACTGATGATTGCCAGTGGC CTGAAGAACCCTCACATTGGGCAAAACCTTCACCTCCACCCAGTGCTGATGGCATGGGGATATTTTCCGGAACAAGAATCTCCAAACCTCAAGGGTAAGA TGTATGAAGGAGGGATCATCACGTCCATCCATAAGATGGACTCCTCAGACGACTCTTCCAACAACACCACTGCCATCATAGAATGTGCAACTGTCGGGCC TGCCTCGTATGCCGCATCCTCTCCATGGACCTCAGGACGGGACCTGAAAGAAAAGATGGTCAAGTATCCAAGAACGGCAGTGCTTTTCGCACTTGTGAGG GATCGAGGCTCGGGGGAAGTGAAGGTAGAAGGAAAGATAACTCACCAGCTAGACAAACAGGACAAGGAGAATCTCAGAACGGGGTTGAGACAGGTGTTGA GGATCATGGTCGCAGCTGGAGCAGCCGAAGTAGGAACTTACTGCAGCGATGGCCAGAGGATTAAATGCCAAGGGATGACGGAGAAGGATTTCGAGCTGTT CTTGGATAGTGTTGTAGTGAATGGAGGAGGATTGCAGTCCACTGATACTAACTGGATGGCATTCTTCTCAGCACACCAAATGGGAAGTTGCAGGATGGGA GCCACGGAAGAAGATGGCGGAGTTGACGAAAATGGAGAGAGCTGGGAAGCCAAGGGTTTATTTGTTTGCGACGGAAGCCTTCTTCCGAGCGCAATCGGAG TCAATCCCATGATCACCATTCAGTCCACAGCGTTCTGCATTGCCAACAGGATAGCTGAATCACTCAAGAAACGAAGATAA
AA sequence Show only first row Show all	>Lus10003621 pacid=23159175 polypeptide=Lus10003621 locus=Lus10003621.g ID=Lus10003621.BGIv1.0 annot-version=v1.0 MKETMEGKTEICQPHTLLRGSSSSYSHGFSPDQMKSLSAICEAFLPPLTLSEKDGILKGIPFERQQALLSFCEASGSDAPIPDEVAELMVKRNTPEGVLL MKLAFKLLSSRFGTLLLAGVSSLDWKWPFIHNFSELPLEKREQILRKWRGEKLFTPLRVVFAMTKVFSLFVFFSRIDETLKNPAWEAIGYRVDDARKITS KRKGERPLEKGIVETIHQDDYTSLIQSLVEKGVQVTEDRDQDTLKIRCDAVIVGSGCGGGVAAAILASSGLKVIVLEKGNYFTSEDYSLLEGPSLEELYE CGGKMSTSNGETSILAGSTVGGGTAVNWSACIKTPDSVLRDWSEDHKLPLFGSLEYREAVEAVWKRIGVTDNCKEEGFQNQVLRKGCENLGLKVEPVSRN SSEDHYCGSCSYGCRTGDKRGTDTTWLVDAVKNDAVIITGCKAEQFVLADDDGGRKKRCLGVVARSLNPKLEKKKLHIEAQVTVSAGGALLTPPLMIASG LKNPHIGQNLHLHPVLMAWGYFPEQESPNLKGKMYEGGIITSIHKMDSSDDSSNNTTAIIECATVGPASYAASSPWTSGRDLKEKMVKYPRTAVLFALVR DRGSGEVKVEGKITHQLDKQDKENLRTGLRQVLRIMVAAGAAEVGTYCSDGQRIKCQGMTEKDFELFLDSVVVNGGGLQSTDTNWMAFFSAHQMGSCRMG ATEEDGGVDENGESWEAKGLFVCDGSLLPSAIGVNPMITIQSTAFCIANRIAESLKKRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28570			Long-chain fatty alcohol dehyd...		Lus10003621 [exp]	0	1
AT1G56220			Dormancy/auxin associated fami...		Lus10031488 [exp]	7.7	0.8028
AT2G15695			Protein of unknown function DU...		Lus10014042 [exp]	8.5	0.8126
AT1G27290			unknown protein		Lus10037037 [exp]	10.4	0.7719
AT4G31040			CemA-like proton extrusion pro...		Lus10040575 [exp]	10.5	0.8058
AT5G52190			Sugar isomerase (SIS) family p...		Lus10014993 [exp]	12.0	0.8033
AT1G27290			unknown protein		Lus10015767 [exp]	14.7	0.7965
					Lus10015768 [exp]	15.5	0.7660
AT1G08570		ACHT4	atypical CYS HIS rich thiored...		Lus10003437 [exp]	15.6	0.7678
AT4G31040			CemA-like proton extrusion pro...		Lus10021616 [exp]	19.5	0.7973
AT1G80920		AtToc12, AtJ8, ...	translocon at the outer envelo...		Lus10041671 [exp]	23.5	0.7834

Compare expression of checked genes

Lus10003621 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.