Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44070 635 / 0 ATPCS1, ARA8, CAD1 CADMIUM SENSITIVE 1, ARABIDOPSIS THALIANA PHYTOCHELATIN SYNTHASE 1, phytochelatin synthase 1 (PCS1) (.1) AT1G03980 609 / 0 ATPCS2 phytochelatin synthase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024921 [exp] 781 / 0 AT5G44070 627 / 0.0 CADMIUM SENSITIVE 1, ARABIDOPSIS THALIANA PHYTOCHELATIN SYNTHASE 1, phytochelatin synthase 1 (PCS1) (.1) Lus10008241 [exp] 569 / 0 AT1G03980 514 / 0.0 phytochelatin synthase 2 (.1) Lus10038621 [exp] 121 / 3e-33 AT5G44070 109 / 8e-30 CADMIUM SENSITIVE 1, ARABIDOPSIS THALIANA PHYTOCHELATIN SYNTHASE 1, phytochelatin synthase 1 (PCS1) (.1) Lus10003623 [exp] 68 / 5e-13 AT5G44070 69 / 1e-13 CADMIUM SENSITIVE 1, ARABIDOPSIS THALIANA PHYTOCHELATIN SYNTHASE 1, phytochelatin synthase 1 (PCS1) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G195800 [exp] 739 / 0 AT5G44070 644 / 0.0 CADMIUM SENSITIVE 1, ARABIDOPSIS THALIANA PHYTOCHELATIN SYNTHASE 1, phytochelatin synthase 1 (PCS1) (.1) Potri.014G195900 [exp] 587 / 0 AT5G44070 543 / 0.0 CADMIUM SENSITIVE 1, ARABIDOPSIS THALIANA PHYTOCHELATIN SYNTHASE 1, phytochelatin synthase 1 (PCS1) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF05023 [flax] [poplar] Phytochelatin Phytochelatin synthase CL0125 [flax] [poplar] PF09328 [flax] [poplar] Phytochelatin_C Domain of unknown function (DUF1984)
Representative CDS sequence Show only first row Show all	>Lus10003622 pacid=23159163 polypeptide=Lus10003622 locus=Lus10003622.g ID=Lus10003622.BGIv1.0 annot-version=v1.0 ATGGCAATGGCTGGCTTTTACCGGCGGGCACTCCCTTCTCCGCCTGCCATCGATTTCGCTTCCTCCGAAGGAAAGCAAATTTTCCTGGAAGCGGTTCAGA ATGGAACCATGGAAGGTTTCTTTAAGTTGATATCCTACTTCCAGACGCAGTCTGAGCCTGCGTATTGCGGGCTGGCGAGCCTCTCTATGGTCTTGAATGC ACTTGCTATCGACCCTGGCAGGAAATGGAAAGGACCGTGGAGGTGGTTTGATGAAACCATGCTGGATTGCTGCGAGCCTTTAGAAAAGGTTAAAGCTGAG GGCATTTCATTCGGAAAAGTTGTTTGTTTGGCACGTTGTGCTGGTGCAAAGGCTGAAGCTTTCCGTACCAGTCAAAGCACCATTGATGATTTTCGTCAAC ATATCATTAGATGTTCGGCCTCTGATAATTGCCATGTGATTTCATCATATCATAGAGGGGTTCTTGGACAGCTAATGAGCTTAACGGGGCCTCTTCATCC ATTTGTTCCCCTTCAGACAGGAACTGGTCATTTTTCACCTATTGGTGGCTACCATGCGGGAAAGGACATGGCACTGATTTTGGATGTTGCGCGCTTTAAG TATCCTCCACACTGGGTTCCACTAAGTCTTCTCTGGGAAGCCATGGATAAAACTGATGTGACAACTGGACATCGTAGAGGGTTTATACTCTTATCGCGAC CTCATACAGAACCAGGACTTCTTTATACCCTGAGCTGCAAACAGGAAAGTTGGACTGGCATTGCAAAATATCTAATCGATGAAGTTCCTGTGCTCTTGAA GTCCAAAGATTTGGAAGACATTGACAAAGTGCTTCAAGTTGTGTTCTTGTCCCTCCCGTCAAATTTTGGTGATTTCATAAAGTGGATAGCAGAAGTTCGG AGACAAGAGGATGGTGAAAACATAAGCCAAGAGGAGAAAGGACGGCTAGCAATGAAGGAGGAGGTACTAAAACAAGTGAGAGATTCGGACCTCTTCAAAC ATGTCGCAGCACTTCTGTCTTTAGCAACAACATCTTGTTGCAGAAACATTCCGACTAAGGGTAAAGATGACGATCTCTCAGATATTGCAGCAAAGCTATG CTGCCAAGGGGCTGAGATTCTGGCAGGGAAGTCTTTCGAAGGATGTTGTTGCATGGAAACATGGATAACATGTTTGAAAGAAAATGGTGATAAGCCCATC ACAGTGGTCTCTGCAACAATTGTCAATGGTGGCAGCCAGCAAGGACTGGAAGTCCTAGTTCCTTCATCTGGAAAGAAACAAAACTCGTGTGATTGTGTGC CGAATAACCAGATGTACCCGGCTAGCAGCGATGTCCTAACAGCACTGTTATTTGCTCTGCCTCCTGAAACATGGGCTAGTATCAAAGACGAGAACCTTCG CAGAGAAGTATACACTCTTGTTTCAAGTGAAAGTCTCCCTATTTTGCTCCAAGAAGAGGTTCTGCACCTACGACACCAGCTCCGCCTTCTAAACACATGC CTGAGGAACAAGGAAGAAGAAGATTTAGCCGCACCCCTCCGGTAA
AA sequence Show only first row Show all	>Lus10003622 pacid=23159163 polypeptide=Lus10003622 locus=Lus10003622.g ID=Lus10003622.BGIv1.0 annot-version=v1.0 MAMAGFYRRALPSPPAIDFASSEGKQIFLEAVQNGTMEGFFKLISYFQTQSEPAYCGLASLSMVLNALAIDPGRKWKGPWRWFDETMLDCCEPLEKVKAE GISFGKVVCLARCAGAKAEAFRTSQSTIDDFRQHIIRCSASDNCHVISSYHRGVLGQLMSLTGPLHPFVPLQTGTGHFSPIGGYHAGKDMALILDVARFK YPPHWVPLSLLWEAMDKTDVTTGHRRGFILLSRPHTEPGLLYTLSCKQESWTGIAKYLIDEVPVLLKSKDLEDIDKVLQVVFLSLPSNFGDFIKWIAEVR RQEDGENISQEEKGRLAMKEEVLKQVRDSDLFKHVAALLSLATTSCCRNIPTKGKDDDLSDIAAKLCCQGAEILAGKSFEGCCCMETWITCLKENGDKPI TVVSATIVNGGSQQGLEVLVPSSGKKQNSCDCVPNNQMYPASSDVLTALLFALPPETWASIKDENLRREVYTLVSSESLPILLQEEVLHLRHQLRLLNTC LRNKEEEDLAAPLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44070		ATPCS1, ARA8, C...	CADMIUM SENSITIVE 1, ARABIDOPS...		Lus10003622 [exp]	0	1
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10038382 [exp]	1.0	0.9359
AT1G62870			unknown protein		Lus10004325 [exp]	2.4	0.9114
AT5G20070		ATNUDX19, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10014493 [exp]	2.4	0.8947
AT5G67470		ATFH6	ARABIDOPSIS FORMIN HOMOLOG 6, ...		Lus10019298 [exp]	3.2	0.8852
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10020215 [exp]	5.3	0.8522
AT1G30330	ARF	ARF6	auxin response factor 6 (.1.2)		Lus10017641 [exp]	5.5	0.8766
AT1G72790			hydroxyproline-rich glycoprote...		Lus10008464 [exp]	5.9	0.8751
AT5G61760		ATIPK2BETA	ARABIDOPSIS THALIANA INOSITOL ...		Lus10020535 [exp]	6.6	0.8855
AT1G16380		ATCHX1	CATION EXCHANGER 1, Cation/hyd...		Lus10024132 [exp]	8.7	0.8686
AT2G26100			Galactosyltransferase family p...		Lus10014451 [exp]	9.0	0.8740

Compare expression of checked genes

Lus10003622 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.