Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44070 69 / 9e-14 ATPCS1, ARA8, CAD1 CADMIUM SENSITIVE 1, ARABIDOPSIS THALIANA PHYTOCHELATIN SYNTHASE 1, phytochelatin synthase 1 (PCS1) (.1) AT1G03980 67 / 4e-13 ATPCS2 phytochelatin synthase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008241 [exp] 82 / 3e-18 AT1G03980 514 / 0.0 phytochelatin synthase 2 (.1) Lus10024921 [exp] 71 / 4e-14 AT5G44070 627 / 0.0 CADMIUM SENSITIVE 1, ARABIDOPSIS THALIANA PHYTOCHELATIN SYNTHASE 1, phytochelatin synthase 1 (PCS1) (.1) Lus10003622 [exp] 69 / 2e-13 AT5G44070 635 / 0.0 CADMIUM SENSITIVE 1, ARABIDOPSIS THALIANA PHYTOCHELATIN SYNTHASE 1, phytochelatin synthase 1 (PCS1) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G195900 [exp] 67 / 4e-13 AT5G44070 543 / 0.0 CADMIUM SENSITIVE 1, ARABIDOPSIS THALIANA PHYTOCHELATIN SYNTHASE 1, phytochelatin synthase 1 (PCS1) (.1) Potri.014G195800 [exp] 66 / 2e-12 AT5G44070 644 / 0.0 CADMIUM SENSITIVE 1, ARABIDOPSIS THALIANA PHYTOCHELATIN SYNTHASE 1, phytochelatin synthase 1 (PCS1) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF05023 [flax] [poplar] Phytochelatin Phytochelatin synthase
Representative CDS sequence Show only first row Show all	>Lus10003623 pacid=23159179 polypeptide=Lus10003623 locus=Lus10003623.g ID=Lus10003623.BGIv1.0 annot-version=v1.0 ATGCAAGTAATTTGGGACATGGCCCTGATTCTGGATGTTGCACGTTTTAAGTATCCTCCCCGCTGGGTTCCTCTGACTCTTCTTTGGGAAGCCATGGATA CAATTCTTCTGAAAAATGGATTTCGTAGAGGCAATCTCATATGGTGGAATAGTAGTGCTGCTTCTGCTATACGAGTCAGCACAGTGAAAAAGGTTAGCTT CCATGCTCTGCTTGACATTGATATTGTGTTTGTTATTGACCACCCAGATTCCGGCATCCTTCCTAGGGTGGCTGCTCCTGAGTTGGGATTTCAGTGGATA CCATATGCCCACAGTTTACAGAAGTCGAAACTGCTGGAAAGCTGTCCGAAAGATGCTGATGACGAATTGACGATGATGAATTATCCATATATTCTCGGCC TTCTCCTATCAGTCCCATACAAAAAAATGAAACATGCTCTCTCTCTCTATCGACAAAGCGGAAGATGCTCTACCCAGATAGATGCTGGAAAGGGAAAGCC AGAAGATAAACAACGCGAAAGGTTTGTGCTTTTATCACCCAATGACCTCATGTTTCCAGTTCTAGTAGGTGAATTGAACTCAGACTGA
AA sequence Show only first row Show all	>Lus10003623 pacid=23159179 polypeptide=Lus10003623 locus=Lus10003623.g ID=Lus10003623.BGIv1.0 annot-version=v1.0 MQVIWDMALILDVARFKYPPRWVPLTLLWEAMDTILLKNGFRRGNLIWWNSSAASAIRVSTVKKVSFHALLDIDIVFVIDHPDSGILPRVAAPELGFQWI PYAHSLQKSKLLESCPKDADDELTMMNYPYILGLLLSVPYKKMKHALSLYRQSGRCSTQIDAGKGKPEDKQRERFVLLSPNDLMFPVLVGELNSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44070		ATPCS1, ARA8, C...	CADMIUM SENSITIVE 1, ARABIDOPS...		Lus10003623 [exp]	0	1
AT1G19110			inter-alpha-trypsin inhibitor ...		Lus10027666 [exp]	1.0	0.8760
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Lus10039575 [exp]	3.7	0.8455
AT3G16500	AUX_IAA	IAA26, PAP1	indole-3-acetic acid inducible...		Lus10006842 [exp]	4.9	0.8200
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Lus10000064 [exp]	6.2	0.7856
AT2G17820		AHK1, ATHK1	histidine kinase 1 (.1)		Lus10028438 [exp]	6.7	0.7930
AT4G38810			Calcium-binding EF-hand family...		Lus10007567 [exp]	7.7	0.8150
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Lus10043340 [exp]	7.7	0.7757
AT1G61065			Protein of unknown function (D...		Lus10011208 [exp]	8.1	0.7909
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10002139 [exp]	9.2	0.8266
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10032887 [exp]	12.2	0.8162

Compare expression of checked genes

Lus10003623 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.