Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28560 440 / 6e-152 RIC7 ROP-interactive CRIB motif-containing protein 7 (.1) AT1G13230 195 / 3e-57 Leucine-rich repeat (LRR) family protein (.1) AT3G25670 191 / 4e-55 Leucine-rich repeat (LRR) family protein (.1) AT1G68780 187 / 3e-54 RNI-like superfamily protein (.1) AT2G42800 172 / 3e-48 AtRLP29 receptor like protein 29 (.1) AT1G80080 158 / 7e-43 AtRLP17, TMM TOO MANY MOUTHS, Receptor Like Protein 17, Leucine-rich repeat (LRR) family protein (.1) AT4G36180 129 / 1e-31 Leucine-rich receptor-like protein kinase family protein (.1) AT3G12610 117 / 8e-29 DRT100 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) AT3G24240 118 / 5e-28 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT2G33170 116 / 2e-27 Leucine-rich repeat receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008242 [exp] 689 / 0 AT4G28560 395 / 8e-135 ROP-interactive CRIB motif-containing protein 7 (.1) Lus10031383 [exp] 183 / 2e-51 AT2G42800 446 / 1e-152 receptor like protein 29 (.1) Lus10034261 [exp] 176 / 4e-50 AT1G13230 460 / 6e-161 Leucine-rich repeat (LRR) family protein (.1) Lus10038948 [exp] 176 / 1e-49 AT1G68780 404 / 2e-138 RNI-like superfamily protein (.1) Lus10010946 [exp] 172 / 4e-48 AT2G42800 459 / 2e-159 receptor like protein 29 (.1) Lus10026208 [exp] 158 / 4e-43 AT1G80080 500 / 2e-175 TOO MANY MOUTHS, Receptor Like Protein 17, Leucine-rich repeat (LRR) family protein (.1) Lus10042458 [exp] 152 / 1e-41 AT1G80080 467 / 3e-163 TOO MANY MOUTHS, Receptor Like Protein 17, Leucine-rich repeat (LRR) family protein (.1) Lus10027239 [exp] 152 / 6e-41 AT3G25670 402 / 6e-138 Leucine-rich repeat (LRR) family protein (.1) Lus10034384 [exp] 146 / 6e-39 AT1G13230 455 / 5e-159 Leucine-rich repeat (LRR) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G227600 [exp] 482 / 5e-168 AT4G28560 444 / 2e-153 ROP-interactive CRIB motif-containing protein 7 (.1) Potri.008G211800 [exp] 175 / 2e-49 AT2G42800 474 / 7e-166 receptor like protein 29 (.1) Potri.001G202100 [exp] 175 / 6e-49 AT1G80080 597 / 0.0 TOO MANY MOUTHS, Receptor Like Protein 17, Leucine-rich repeat (LRR) family protein (.1) Potri.008G114700 [exp] 144 / 8e-38 AT1G68780 387 / 2e-131 RNI-like superfamily protein (.1) Potri.016G126900 [exp] 125 / 3e-30 AT1G45616 510 / 5e-165 receptor like protein 6 (.1) Potri.005G030800 [exp] 119 / 2e-28 AT3G47570 576 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G060100 [exp] 115 / 3e-27 AT3G47570 670 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G040200 [exp] 115 / 4e-27 AT5G23400 275 / 3e-83 Leucine-rich repeat (LRR) family protein (.1) Potri.005G235100 [exp] 114 / 1e-26 AT1G75640 1231 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.008G009300 [exp] 114 / 1e-26 AT1G73080 1064 / 0.0 PEP1 receptor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10003624 pacid=23159170 polypeptide=Lus10003624 locus=Lus10003624.g ID=Lus10003624.BGIv1.0 annot-version=v1.0 ATGGCGACCTCCGTTTCGTTTCTCTTCCTCTCCTTCCTCGCCCTGCTACTCTGCTCCTCCGCTGCCGACGTCCCGCTCCTTGACCCCGCCGAGCAGGAAT CCGTCTACCGTGTCCTTAACGCCGTCAATTCTGCAATCCCCTGGCGCTCTTTCTTCCCAGACGACCTCTGCCTCTCCTCCCCACACGGCGTCGTGTGCGA CTACTTCGACTCAAACGACGGCGTTTACACCTCGGCTCATATCACGGAGCTCAGTTTCGGGTACGTTTCGGACTACACTCCCAACCCGCCTTGCTCCGCT AACTCCACCATCGACCCGCTCCTCTTCACCTCCTTCACTTTCCTCCGCAAGCTATTCTTCTACAAGTGCTTCTCTGCTTCCGGTCCGATCGTCGCTTTCC CGGACGTCTCTTCTTCCTTCCCGGATTTCGGAGCTAGCCTGGAGGAGCTAGTCCTCATCGACAACCCTGGACTCGTCGCCCCTCTTTCCTCCGTCGTTTC CGCCAATTTCACAAATCTCCGGCGGCTGGTAGTCACCGGAAACGGAGTGTACGGCGACCTTCCGGAGGAGAAGATCGGATCTCTGGTGAATCTCGAAGAA ATAACTCTGTCCGGAAACCAGTTGTCCGGCGATATGCCTTCCACCTTAGTCAATTCGAAAAAACTCAAGGTTCTTGATTTTAGCCGCAACTGCTTCGCCG GAATCGTCCCTGATTCAATTGGAAATCTCCCGCAGCTTCTAAAACTGGACCTTTCCGCCAACTCATTTTCCGGCAGAATCCCGGAGAACTTCATCAACCT CAAGAGCTTGGAGTTTTTGGACCTGAGTTTCAACCGATTCGGCAACTACGGCATCCCTCTCTTCATCGGGGAGCTTCCGAAGCTGAGAGAAGTCTATATG AGCGGCAATCCGTTGGGAGGGAGCATCCCGGTTGAGATATGGAGCAATTTGGCGGGAGTTTCAGGGATCGGATTCTCGAACATGAGTCTCGCCGGTGAAA TTCCGGCGACCATGGGTATGCATCTGAAGAGCTTGTGCTACCTAGGGCTAGACAACAACAACCTGGTAGGGAAAGTCCCGGAAGAGCTGAGCGGGTTGGA GTTTGTCAGCGAGATCAACTTGGAGAACAATAGCTTGACCGGTAGGCTCCGTTTCCCTGCCAACTTCACATCAAGGATCGGAACGAAGCTGAAGCTGAGA GGCAATTCTGGACTCTGCATTGACGATTCAATCAGTTTTGATCACTTGAGTAATATGAAGCTGTGCAGCAACGATTCAAACAACAACCCGAATCCAGCCA TTTGGGGAGAAGAAAGCTCCTCCTCCTCTTCCTTTAATTCTGCAGCTGCTGCTGCATCCTCTGACTCTGTTTCGCTTCATTTTCAGGTGATAATGATGAT GATCTTCTGTGGTTATCTTCTGGCCTGGTAA
AA sequence Show only first row Show all	>Lus10003624 pacid=23159170 polypeptide=Lus10003624 locus=Lus10003624.g ID=Lus10003624.BGIv1.0 annot-version=v1.0 MATSVSFLFLSFLALLLCSSAADVPLLDPAEQESVYRVLNAVNSAIPWRSFFPDDLCLSSPHGVVCDYFDSNDGVYTSAHITELSFGYVSDYTPNPPCSA NSTIDPLLFTSFTFLRKLFFYKCFSASGPIVAFPDVSSSFPDFGASLEELVLIDNPGLVAPLSSVVSANFTNLRRLVVTGNGVYGDLPEEKIGSLVNLEE ITLSGNQLSGDMPSTLVNSKKLKVLDFSRNCFAGIVPDSIGNLPQLLKLDLSANSFSGRIPENFINLKSLEFLDLSFNRFGNYGIPLFIGELPKLREVYM SGNPLGGSIPVEIWSNLAGVSGIGFSNMSLAGEIPATMGMHLKSLCYLGLDNNNLVGKVPEELSGLEFVSEINLENNSLTGRLRFPANFTSRIGTKLKLR GNSGLCIDDSISFDHLSNMKLCSNDSNNNPNPAIWGEESSSSSSFNSAAAAASSDSVSLHFQVIMMMIFCGYLLAW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28560		RIC7	ROP-interactive CRIB motif-con...		Lus10003624 [exp]	0	1
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Lus10021319 [exp]	4.5	0.8504
AT3G02150	TCP	TFPD, PTF1, TCP...	TEOSINTE BRANCHED1, CYCLOIDEA ...		Lus10032984 [exp]	6.2	0.8247
AT1G71160		KCS7	3-ketoacyl-CoA synthase 7 (.1)		Lus10029880 [exp]	6.6	0.7495
AT3G24050	GATA	GATA1	GATA transcription factor 1 (....		Lus10031464 [exp]	7.7	0.7813
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10027937 [exp]	8.8	0.7878
AT4G19985			Acyl-CoA N-acyltransferases (N...		Lus10003689 [exp]	9.1	0.7325
AT4G35190		LOG5	LONELY GUY 5, Putative lysine ...		Lus10022638 [exp]	10.1	0.8162
AT5G53210	bHLH	SPCH, bHLH098	SPEECHLESS, basic helix-loop-h...		Lus10001066 [exp]	11.2	0.8090
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Lus10011472 [exp]	14.5	0.8048
AT1G68780			RNI-like superfamily protein (...		Lus10038948 [exp]	14.7	0.7965

Compare expression of checked genes

Lus10003624 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.