Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33470 242 / 3e-81 ATGLTP1, GLTP1 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) AT3G21260 117 / 3e-32 GLTP3 GLYCOLIPID TRANSFER PROTEIN 3, Glycolipid transfer protein (GLTP) family protein (.1), Glycolipid transfer protein (GLTP) family protein (.2), Glycolipid transfer protein (GLTP) family protein (.3) AT1G21360 113 / 1e-30 GLTP2 glycolipid transfer protein 2 (.1) AT4G39670 52 / 5e-08 Glycolipid transfer protein (GLTP) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008244 [exp] 304 / 2e-105 AT2G33470 216 / 1e-71 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) Lus10011806 [exp] 254 / 2e-85 AT2G33470 324 / 4e-114 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) Lus10021169 [exp] 251 / 1e-84 AT2G33470 334 / 3e-118 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) Lus10018917 [exp] 123 / 2e-34 AT3G21260 229 / 3e-76 GLYCOLIPID TRANSFER PROTEIN 3, Glycolipid transfer protein (GLTP) family protein (.1), Glycolipid transfer protein (GLTP) family protein (.2), Glycolipid transfer protein (GLTP) family protein (.3) Lus10029765 [exp] 119 / 5e-33 AT3G21260 212 / 9e-70 GLYCOLIPID TRANSFER PROTEIN 3, Glycolipid transfer protein (GLTP) family protein (.1), Glycolipid transfer protein (GLTP) family protein (.2), Glycolipid transfer protein (GLTP) family protein (.3) Lus10028618 [exp] 118 / 3e-32 AT1G21360 224 / 6e-74 glycolipid transfer protein 2 (.1) Lus10042793 [exp] 119 / 1e-30 AT1G21370 486 / 2e-170 unknown protein Lus10034305 [exp] 54 / 4e-08 AT1G68570 681 / 0.0 Major facilitator superfamily protein (.1) Lus10035024 [exp] 47 / 7e-06 AT4G39670 305 / 4e-105 Glycolipid transfer protein (GLTP) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G069600 [exp] 257 / 4e-87 AT2G33470 332 / 3e-117 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) Potri.002G035600 [exp] 234 / 3e-78 AT2G33470 273 / 2e-94 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) Potri.008G168800 [exp] 234 / 4e-78 AT2G33470 315 / 1e-110 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) Potri.005G188600 [exp] 131 / 2e-37 AT1G21360 259 / 3e-88 glycolipid transfer protein 2 (.1) Potri.002G071100 [exp] 130 / 3e-37 AT1G21360 253 / 8e-86 glycolipid transfer protein 2 (.1) Potri.008G119600 [exp] 50 / 2e-07 AT4G39670 307 / 1e-106 Glycolipid transfer protein (GLTP) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08718 [flax] [poplar] GLTP Glycolipid transfer protein (GLTP)
Representative CDS sequence Show only first row Show all	>Lus10003626 pacid=23159166 polypeptide=Lus10003626 locus=Lus10003626.g ID=Lus10003626.BGIv1.0 annot-version=v1.0 ATGAAGGTTGTTAGGTCTAAGCGTGGCGAAATCCTCACCAAGCCTTTCTTGGACTTGTGCACCATGATTCTTCCTGTCTTAGACAACTTTGGAACATCAT TATCACCTGTGAAATCTGATGTTGGTGGGAACATAAATAGGTTGAATGATATCTATGACTCAAATCCAACAAAGTTCAACTTTCTACACAACATTGTACA ACCAGAGATTGAATCCAACACAGCCAAATCTGCATCTAGTTGTACCAATGCTCTTCTTTGGTTGACAAGGGCACTGGACTTTTTGGTGGCGGTGTTTCAG AACATGTTGGATCATCCAGATTGGGGAATGTCACAAGTTTGTTCAGCTGCATATTCAAGGACCCTCAAAAAGTGGCATAATTGGCTTTCCAGTTCGAGTT TCACTGTGGTGATGAAGCTGGCGCCAGACAGAAAGAAATTCGTGGAGGTAATTGGAGGGACAGGAGATCTTGATGCAGAAATGTTACAGTTCTGTATAAG CTTGGCGCCTTTCCTAAAAGAAAACCACAAATTCTTGGTAATTAATTCAGATTGTAATGCCTTATATCTAGTTGTGAATATAATTGTTAAGTTCATGCAC TACAAGAGAATCGCTGACGCGATTGGAATCCCTATCAATCGGTTTAATAGCATTTTGGAATCCAATGTTAAGCAAATTAACAACGGTTTTTTGCGTTCCG ATGTCAGACGAGGATTGACAGCGGTTTTAGGAAGCATTGTTAACTGA
AA sequence Show only first row Show all	>Lus10003626 pacid=23159166 polypeptide=Lus10003626 locus=Lus10003626.g ID=Lus10003626.BGIv1.0 annot-version=v1.0 MKVVRSKRGEILTKPFLDLCTMILPVLDNFGTSLSPVKSDVGGNINRLNDIYDSNPTKFNFLHNIVQPEIESNTAKSASSCTNALLWLTRALDFLVAVFQ NMLDHPDWGMSQVCSAAYSRTLKKWHNWLSSSSFTVVMKLAPDRKKFVEVIGGTGDLDAEMLQFCISLAPFLKENHKFLVINSDCNALYLVVNIIVKFMH YKRIADAIGIPINRFNSILESNVKQINNGFLRSDVRRGLTAVLGSIVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33470		ATGLTP1, GLTP1	ARABIDOPSIS GLYCOLIPID TRANSFE...		Lus10003626 [exp]	0	1
					Lus10003272 [exp]	1.7	1.0000
					Lus10010826 [exp]	2.8	1.0000
					Lus10022108 [exp]	3.5	1.0000
AT2G36780			UDP-Glycosyltransferase superf...		Lus10023893 [exp]	4.0	1.0000
AT3G47090			Leucine-rich repeat protein ki...		Lus10028479 [exp]	4.5	1.0000
					Lus10030783 [exp]	4.9	1.0000
					Lus10036152 [exp]	5.3	1.0000
					Lus10037861 [exp]	5.7	1.0000
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10037952 [exp]	6.0	1.0000
AT5G48540			receptor-like protein kinase-r...		Lus10006752 [exp]	8.6	0.8228

Compare expression of checked genes

Lus10003626 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.