Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44090 741 / 0 Calcium-binding EF-hand family protein (.1) AT5G28850 709 / 0 Calcium-binding EF-hand family protein (.1.2) AT5G28900 709 / 0 Calcium-binding EF-hand family protein (.1) AT1G54450 705 / 0 Calcium-binding EF-hand family protein (.1) AT1G03960 696 / 0 Calcium-binding EF hand family protein (.1.2) AT5G18580 85 / 3e-17 FASS2, TON2, GDO, FS1, EMB40, FASS GORDO, FASS 1, EMBRYO DEFECTIVE 40, tonneau 2 (TON2) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008247 [exp] 994 / 0 AT5G44090 774 / 0.0 Calcium-binding EF-hand family protein (.1) Lus10024917 [exp] 833 / 0 AT5G44090 751 / 0.0 Calcium-binding EF-hand family protein (.1) Lus10022907 [exp] 832 / 0 AT5G44090 737 / 0.0 Calcium-binding EF-hand family protein (.1) Lus10021174 [exp] 736 / 0 AT5G28850 804 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10011811 [exp] 725 / 0 AT5G28850 797 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10029614 [exp] 723 / 0 AT5G28850 792 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10032772 [exp] 714 / 0 AT5G28850 778 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10027963 [exp] 693 / 0 AT5G28850 771 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10008193 [exp] 680 / 0 AT5G28850 768 / 0.0 Calcium-binding EF-hand family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G035800 [exp] 785 / 0 AT5G44090 814 / 0.0 Calcium-binding EF-hand family protein (.1) Potri.019G019500 [exp] 749 / 0 AT5G28850 885 / 0.0 Calcium-binding EF-hand family protein (.1.2) Potri.005G227100 [exp] 748 / 0 AT5G44090 772 / 0.0 Calcium-binding EF-hand family protein (.1) Potri.013G047300 [exp] 745 / 0 AT5G28850 887 / 0.0 Calcium-binding EF-hand family protein (.1.2) Potri.010G022300 [exp] 78 / 5e-15 AT5G18580 835 / 0.0 GORDO, FASS 1, EMBRYO DEFECTIVE 40, tonneau 2 (TON2) (.1) Potri.008G215300 [exp] 76 / 2e-14 AT5G18580 830 / 0.0 GORDO, FASS 1, EMBRYO DEFECTIVE 40, tonneau 2 (TON2) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0330 [flax] [poplar] AVL9 PF08616 [flax] [poplar] SPA Stabilization of polarity axis
Representative CDS sequence Show only first row Show all	>Lus10003628 pacid=23159167 polypeptide=Lus10003628 locus=Lus10003628.g ID=Lus10003628.BGIv1.0 annot-version=v1.0 ATGGATATTGATACAGTAGGAGGAAATGATGTTAGTAGCTATTTGGACCCTGAACTGTTGCATCTTCCCGAGGTTTCTCCATTTGAGCTCAAGCCGACAA CTCAAGTCGCTGAAGATTTGTTTTCTCAATGGCTTTCTCTTCCTGACACTAGCCGGCTGGTGAAATCATTAGTTAGGGACGCGAAGGCTGGGCTTCCAAT AAATGCTCATAGCATCTCTTCTAGTGTTGGTGCTGGAGGAAGCAATTCGGTTACAAATGCCAGTCCGCCTCCACTTTCGCCTAGGAATTCATGTGTTTCT CCACGGACATCAAAGTATATAGCTAGCCCTTTCTCTTTGGCATCTCCCCGGAAATTGGCTATTGAACCGGTGCAAGAAGTTATACCGCAGTTCTATTTCC AACATGGGCGTCCTCCGCCGAGTGAACTGATGGAACAGTGTCTTTCTACAGTCAATAGACTATTCAACAATAATCTCGATGGACTGCACATAGATGAATT CAAGTCCGTGACGAAGGAAATTTGCAACCTACCATCCTTCTTCTCATCCGTGCTTTTCAAGAGGATAGATGTTGAAAGCTATGGGATTGTCACGAGTGTT CGTGGTGGGCAATTTCTCCCTCATGCAGTTATGGATGATAGATGTGCTAGGGATGCATTTGTAAAATACTGGGTAAAGAGCAATATGCTCACTATGGATA TGGCAACTCAAGTCTTTAAGATTTTAAAGCAGCCTGAACGGCGGTATATAACTAAGGCTGACTTCAAACCTATTCTTGAAGAACTGCTATCCACGCACTC TGGGCTGGAATTTTTACAGGGCACACCTGAGTTTCAAGAGAAATATGCTGAAACAGTCATCTGTAGAATATTTTACCACGTCAATAGATCAGGAAATGGC CGTCTGACCCTAAGGGAATTGAAACGTAGCAATCTCATCGCTGTCATGCAACAAGTTGACGAAGAAGAGGAAATCAACAAAATCCTAAGATATTTCTCCT ATGAACATTTCTATGTGATATATTGCAAATTTTGGGAGCTGGACACAGACCATGATTACTTGATCGACCGGGAGAATCTCATCAGATATGGTAATCATTG TCTTACATACAGGATTGTTGATAGAATATTTTCACAGGCACCAAGGAAGTTTACGAGCAATGTGGAAGGAAAGATGAGCTATGAAGATTTTGTTTATTTC ATACTGTCGGAGGAGGATAAATCTTCTGAACCTAGTCTTGAATATTGGTTCAGATGCGTTGATTTGGATGGAAATGGGGTCCTAACATCCAGTGAATTGC AATACTTCTACGAGGAGCAGCTGCACCGAATGAGTTGCATGTCGCAGGAAACTGTTCCATTTGAGGATATATTGTGTCAAATAGTTGACATGATTTCACC TGAGAAGGAAGGCTATATCACATTGCGTGACTTGAAAAGAAGCAAACTTTCCGGGAATATTTTCAACATTCTTTTCAATCTCAACAAGTTCATGGCCTTT GAAAGTCGTGACCCATTTCTAATCCATCAGGAGCGCGAGGAACCAACTTTAACCGAGTGGGATCGGTTCGCACACAGAGAATATATCAGACTTTCAATGG AGGAAGACACAGAGGTGGTCTCAAACGGAAATGTAGAAATGTGGGAAGAATCTCTAGAGGCTCCATTCTAA
AA sequence Show only first row Show all	>Lus10003628 pacid=23159167 polypeptide=Lus10003628 locus=Lus10003628.g ID=Lus10003628.BGIv1.0 annot-version=v1.0 MDIDTVGGNDVSSYLDPELLHLPEVSPFELKPTTQVAEDLFSQWLSLPDTSRLVKSLVRDAKAGLPINAHSISSSVGAGGSNSVTNASPPPLSPRNSCVS PRTSKYIASPFSLASPRKLAIEPVQEVIPQFYFQHGRPPPSELMEQCLSTVNRLFNNNLDGLHIDEFKSVTKEICNLPSFFSSVLFKRIDVESYGIVTSV RGGQFLPHAVMDDRCARDAFVKYWVKSNMLTMDMATQVFKILKQPERRYITKADFKPILEELLSTHSGLEFLQGTPEFQEKYAETVICRIFYHVNRSGNG RLTLRELKRSNLIAVMQQVDEEEEINKILRYFSYEHFYVIYCKFWELDTDHDYLIDRENLIRYGNHCLTYRIVDRIFSQAPRKFTSNVEGKMSYEDFVYF ILSEEDKSSEPSLEYWFRCVDLDGNGVLTSSELQYFYEEQLHRMSCMSQETVPFEDILCQIVDMISPEKEGYITLRDLKRSKLSGNIFNILFNLNKFMAF ESRDPFLIHQEREEPTLTEWDRFAHREYIRLSMEEDTEVVSNGNVEMWEESLEAPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44090			Calcium-binding EF-hand family...		Lus10003628 [exp]	0	1
AT5G44090			Calcium-binding EF-hand family...		Lus10008247 [exp]	1.0	0.9468
AT5G12040			Nitrilase/cyanide hydratase an...		Lus10025012 [exp]	1.4	0.9353
AT5G14520			pescadillo-related (.1)		Lus10001362 [exp]	4.0	0.9111
AT4G00960			Protein kinase superfamily pro...		Lus10015423 [exp]	5.6	0.8831
AT5G55100			SWAP (Suppressor-of-White-APri...		Lus10032646 [exp]	7.1	0.9314
AT4G01710		ARPC5, CRK	CROOKED, ARP2/3 complex 16 kDa...		Lus10012040 [exp]	7.9	0.8917
AT5G63280	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10014794 [exp]	8.1	0.9095
AT1G70620			cyclin-related (.1.2.3)		Lus10000440 [exp]	8.1	0.8828
AT5G65540			unknown protein		Lus10025712 [exp]	8.8	0.9017
AT1G70620			cyclin-related (.1.2.3)		Lus10026699 [exp]	8.8	0.8636

Compare expression of checked genes

Lus10003628 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.