Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003629 pacid=23159165 polypeptide=Lus10003629 locus=Lus10003629.g ID=Lus10003629.BGIv1.0 annot-version=v1.0 ATGATCGGAGGGGGGAAGGAGATGAAGACAAGGTATCCACACCGCCTACAAGAACTTGAGGGATATCTCCTCTTTACCTTCTTCTCCGCTCCGATCTTGG ATTCATTCCGCGGCCGGCCGAGCTCAAAGTCTCCTACTTTCGATCAGTGGGTTTCATCCAGGTTTCAACAAGTCCTGAAATTTGAATATGATTCCGGCGG TGTGTGGTCGACGCCTGATCAGGGCTCCGATGATCGGTGGGGGGAACGAGATGAAGACAAGATATCCACTGCCGACCCCAACAACTTGACGGATATCTCC TCTTCGTTCTTCTTCCTCCCTCCGATCTTGGATCCGGTGGCCCAAGTCTCCTGCGTCGGATCGGTGGATGTCATCCCTTTGAACGGCGGCTTTCGACTTC CGGTGCAAGATTTCGAGTAA
AA sequence Show only first row Show all	>Lus10003629 pacid=23159165 polypeptide=Lus10003629 locus=Lus10003629.g ID=Lus10003629.BGIv1.0 annot-version=v1.0 MIGGGKEMKTRYPHRLQELEGYLLFTFFSAPILDSFRGRPSSKSPTFDQWVSSRFQQVLKFEYDSGGVWSTPDQGSDDRWGERDEDKISTADPNNLTDIS SSFFFLPPILDPVAQVSCVGSVDVIPLNGGFRLPVQDFE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10003629 [exp]	0	1
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10031577 [exp]	1.4	0.9145
AT1G13680			PLC-like phosphodiesterases su...		Lus10031973 [exp]	3.2	0.9087
AT1G35670		CPK11, ATCDPK2,...	calcium-dependent protein kina...		Lus10006065 [exp]	4.5	0.8857
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Lus10018230 [exp]	4.6	0.8888
AT3G48750		CDKA1, CDC2A, C...	cell division control 2 (.1)		Lus10009258 [exp]	9.5	0.6722
					Lus10006254 [exp]	10.7	0.8772
AT5G59380		MBD6, ATMBD6	methyl-CPG-binding domain 6 (....		Lus10029564 [exp]	14.5	0.8348
AT2G26650		AKT1, ATAKT1	K+ transporter 1, K+ transport...		Lus10033052 [exp]	14.9	0.8444
AT5G03810			GDSL-like Lipase/Acylhydrolase...		Lus10035585 [exp]	15.6	0.8183
AT4G17970		ATALMT12, ALMT1...	"aluminum-activated, malate tr...		Lus10030975 [exp]	16.2	0.8338

Compare expression of checked genes

Lus10003629 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.