Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57590 922 / 0 BIO1 biotin auxotroph 1, adenosylmethionine-8-amino-7-oxononanoate transaminases (.1) AT1G80600 80 / 1e-15 WIN1 HOPW1-1-interacting 1 (.1) AT3G22200 79 / 4e-15 HER1, GABA-T, POP2 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) AT5G46180 53 / 5e-07 DELTA-OAT ornithine-delta-aminotransferase (.1) AT2G38400 47 / 5e-05 AGT3 alanine:glyoxylate aminotransferase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033915 [exp] 1410 / 0 AT5G57590 987 / 0.0 biotin auxotroph 1, adenosylmethionine-8-amino-7-oxononanoate transaminases (.1) Lus10008025 [exp] 80 / 3e-15 AT1G80600 614 / 0.0 HOPW1-1-interacting 1 (.1) Lus10003810 [exp] 77 / 2e-14 AT3G22200 758 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Lus10010465 [exp] 77 / 2e-14 AT3G22200 756 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Lus10031196 [exp] 75 / 8e-14 AT1G80600 606 / 0.0 HOPW1-1-interacting 1 (.1) Lus10023299 [exp] 59 / 9e-09 AT5G46180 743 / 0.0 ornithine-delta-aminotransferase (.1) Lus10038510 [exp] 58 / 2e-08 AT5G46180 741 / 0.0 ornithine-delta-aminotransferase (.1) Lus10025262 [exp] 48 / 3e-05 AT3G08860 722 / 0.0 PYRIMIDINE 4 (.1) Lus10009086 [exp] 46 / 8e-05 AT3G08860 625 / 0.0 PYRIMIDINE 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G170400 [exp] 957 / 0 AT5G57590 1091 / 0.0 biotin auxotroph 1, adenosylmethionine-8-amino-7-oxononanoate transaminases (.1) Potri.005G095800 [exp] 82 / 4e-16 AT1G80600 636 / 0.0 HOPW1-1-interacting 1 (.1) Potri.016G018500 [exp] 82 / 7e-16 AT3G22200 826 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Potri.017G053500 [exp] 79 / 2e-15 AT1G80600 677 / 0.0 HOPW1-1-interacting 1 (.1) Potri.006G020900 [exp] 78 / 7e-15 AT3G22200 834 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Potri.011G082800 [exp] 59 / 8e-09 AT5G46180 734 / 0.0 ornithine-delta-aminotransferase (.1) Potri.007G085600 [exp] 52 / 2e-06 AT4G39660 814 / 0.0 alanine:glyoxylate aminotransferase 2 (.1) Potri.006G106800 [exp] 51 / 2e-06 AT3G08860 771 / 0.0 PYRIMIDINE 4 (.1) Potri.016G132200 [exp] 51 / 3e-06 AT2G38400 769 / 0.0 alanine:glyoxylate aminotransferase 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00202 [flax] [poplar] Aminotran_3 Aminotransferase class-III
Representative CDS sequence Show only first row Show all	>Lus10003630 pacid=23159160 polypeptide=Lus10003630 locus=Lus10003630.g ID=Lus10003630.BGIv1.0 annot-version=v1.0 ATGCTTCCTTCCTCGCGCTGCCTCCTCTGCCACCATTACAGTCTCCCTCTCCGCCTCCTGCAACGGAGACTCCTCTCTAGCTCCTCCTCCTCCTCGCCGC CTCATGTCCCACTGTCACACCCAACTTACATGATCTGGGCCTCCAACACGTCCCTCGGCAAAACTCTCGTCTCCACCGGTCTAGCTTCCTCCTTCCTCCT CTCGCACTTCTCCCCCGTAGAGCATCGCAAGCTCCTGTATCTCAAACCAGTTCAAACTGGATTTCCGTCTGACTCGGACTCACATTTCGTCTTCTCCAGA CTTTGCTCTCTTGCTTCCCGGCGATGTGCAGCAGATCCTCGTTTCTCCTTCTCCGCCTTCAATTCCGTTCTTCAATCCTCTCTTCCCGCTGCCAAGGGAC AAAATCTCCCCAGCGAGAAGCAATGCAGCTTATCAAGGGCAACGACTACGGGTTCTGCTGAGTTAGTCTGTGAGACGTTGTATGCATGGAAGGAAGCAGT TTCCCCACATTTGGCAGCAAGGAGAGAGAATTTTACTGTCTCGGATTCGTCATTGGTGAAGGAATTGGAGAAGCATCTGACGGCTTCTCTGGATGGGGAG TTCGTGAAGGAAAGTGAACGAGCTTTTTGCATTGTTGAGACCGCTGGAGGTGTAGCTAGCCCAGGTCCTTCTGGGTCCTTGCAGTGTGATTTGTATAGGC CATTCCGTTTACCAGGGATTCTTGTGGGAGATGGACGACTTGGTGGCATATCTGGAACTATTTCAGCTTATGAGAGTCTGATACTTCGAGGATATGATAT TGTGGCAGTTGTGCTTGAAGATCATGGCCTTGTTAATGAGGATTCATTAAGATCATACTTTAGAAACAGGGTACCTATACTTGTGTTGCCATCAATACCA CTGGATATGTCAAATGACTTGGTGGAATGGTTTAGGGAATCTGACAAAGTATTCGATTCCCTTCGCGGACAAAGCGATACTTTATGGTGGCCGTTTACTC AGCACAAGCTTGTACCTGAAGCAAGTGTAACCGTCATTGATTCACGATTAGGCGAGAACTTTGCAGTTTATAAGGCTCAAAATAATGGATCCTTAACTCA ACAATTTGATGCATGTGCTAGCTGGTGGACTCAAGGGCCTGATGCTGCACTGCAGATGGAGCTTGCTAGAGAATTGGGCTACGCTGCTGGACGATTTGGT CATGTGATGTTCCCAGAGAATGTTTATGAGCCAGCCTTAGAATGCGCACAGCTGCTGCTTGAGAGTGTAGGCAAAGGTTGGGCTTCAAGGGTTTTCTTTT CTGATAACGGATCAACAGGAATTGAAATTGCCCTTAAAATGGCATTCCGCAAGTTCTGCTTTGACAATGGCATGCTTTCAGATGTCGACAGTAGTAATGT AACTGAAAAATCCTTTATTCTAAAGGTATTAGCTCTTAAAGGCTCGTACCATGGTGACACATTGGGTGCAATGGAAGCACAAGCACCATCTTCATATACA GGCTTCATCCAACAACCATGGTACAGTGGAAGAGGTTATTTTATGGATCCACCTGCTGTCTCTATGTGCGACAATATATGGATTCTTACCTTGCCATCAA CGATGGATCTGCAGAATCTAAATCCTAGGGAGACAATTGTACAAGCAGCCGGAGGTATGCTCCTGATTGATCCACTTTTCCAGCGGGTCCTTGTTAATGA ATGCCGAAGGAGAAACATTCCAGTTATATTTGATGAAGTGTTTACTGGTTTCTGGCGTCTTGGGGTTGAGACTGCAGCAGAACTGCTTGGATGTGTACCT GACATAGCCTGCTTTGCAAAGCTGATGACTGGTGGGGTTATACCTTTAGCGGCTACATTGGTCACAGAAGCAGTCTTTGATGTGTTCACTAGCGACTCAA AGTTGAATGCCCTCTTGCACGGACACTCTTACTCTGCACATGCAATGGGGTGCACAGCAGCTGCTAAATCCATCAAATGGTTTAAAGATCCTCAGACAAA TGTTAATATAACTTCTGAAGGGTTGCTTTGTGAGATGTGGGATGCTGAGCTGGTGGCATCCATATCTGCCCATCATTCAGTCCAGAGAGTGATCACATTG GGAACAGTATTTGTTGTAGAATTACGAGCAGAAGGGGACAATGCTGGGTATGCATCTACGTATGCAAGGGAGCTTGTAATGAAGATGAGGGAAGATGGTG TATACATGAGGCCGCTTGGTAATGTCATCTATCTCATGTCTACGCCTTTGACAAACCCCCATACTTGCAAGGAATTGCTCCTCAAGCTTTTCACCAGACT GCAACAATTCCGACACTAA
AA sequence Show only first row Show all	>Lus10003630 pacid=23159160 polypeptide=Lus10003630 locus=Lus10003630.g ID=Lus10003630.BGIv1.0 annot-version=v1.0 MLPSSRCLLCHHYSLPLRLLQRRLLSSSSSSSPPHVPLSHPTYMIWASNTSLGKTLVSTGLASSFLLSHFSPVEHRKLLYLKPVQTGFPSDSDSHFVFSR LCSLASRRCAADPRFSFSAFNSVLQSSLPAAKGQNLPSEKQCSLSRATTTGSAELVCETLYAWKEAVSPHLAARRENFTVSDSSLVKELEKHLTASLDGE FVKESERAFCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLILRGYDIVAVVLEDHGLVNEDSLRSYFRNRVPILVLPSIP LDMSNDLVEWFRESDKVFDSLRGQSDTLWWPFTQHKLVPEASVTVIDSRLGENFAVYKAQNNGSLTQQFDACASWWTQGPDAALQMELARELGYAAGRFG HVMFPENVYEPALECAQLLLESVGKGWASRVFFSDNGSTGIEIALKMAFRKFCFDNGMLSDVDSSNVTEKSFILKVLALKGSYHGDTLGAMEAQAPSSYT GFIQQPWYSGRGYFMDPPAVSMCDNIWILTLPSTMDLQNLNPRETIVQAAGGMLLIDPLFQRVLVNECRRRNIPVIFDEVFTGFWRLGVETAAELLGCVP DIACFAKLMTGGVIPLAATLVTEAVFDVFTSDSKLNALLHGHSYSAHAMGCTAAAKSIKWFKDPQTNVNITSEGLLCEMWDAELVASISAHHSVQRVITL GTVFVVELRAEGDNAGYASTYARELVMKMREDGVYMRPLGNVIYLMSTPLTNPHTCKELLLKLFTRLQQFRH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57590		BIO1	biotin auxotroph 1, adenosylme...		Lus10003630 [exp]	0	1
AT3G10690		GYRA	DNA GYRASE A (.1)		Lus10008940 [exp]	3.5	0.9479
AT5G55230		ATMAP65-1	microtubule-associated protein...		Lus10043178 [exp]	4.1	0.9234
AT3G21060		RBL	RbBP5 LIKE, Transducin/WD40 re...		Lus10035969 [exp]	4.2	0.9332
AT5G58480			O-Glycosyl hydrolases family 1...		Lus10042269 [exp]	5.0	0.9371
AT5G13840		FZR3	FIZZY-related 3 (.1.2)		Lus10040282 [exp]	6.1	0.9485
AT5G59190			subtilase family protein (.1)		Lus10009867 [exp]	7.7	0.9229
AT2G19520		ATMSI4, ACG1, N...	MULTICOPY SUPPRESSOR OF IRA1 4...		Lus10011936 [exp]	9.8	0.9399
AT2G33340		MAC3B	MOS4-associated complex 3B (....		Lus10023728 [exp]	11.2	0.9301
AT4G00980			zinc knuckle (CCHC-type) famil...		Lus10003998 [exp]	12.5	0.9285
AT2G38560		RDO2, TFIIS	REDUCED DORMANCY 2, transcript...		Lus10025131 [exp]	13.7	0.9106

Compare expression of checked genes

Lus10003630 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.