Plant FIBer expression Database

Lus10003631 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009962
[exp]
1356 / 0 ND /
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G051100
[exp]
1074 / 0 ND /
Potri.001G255700
[exp]
1068 / 0 ND /
PFAM info
Representative CDS sequence
>Lus10003631 pacid=23141610 polypeptide=Lus10003631 locus=Lus10003631.g ID=Lus10003631.BGIv1.0 annot-version=v1.0
ATGTCAGAAACATCCATCTGGGTCACTGGGGAAAGTGGGTCTATCTATGAAAGGTTTTGGAATGGAGTTCAGTGGGTGGTAGCTCCCCATGACCTTCCAA
TGTCTGCTGGACATGCAATTGGTGTGTTCATTGTGAATCGCACCATTCTTGCTCTATCAGAATCAGGAGGGTTGTACCAGATACAACTCACTGAGATTGC
ACAGCCAATTTGGGTAGAGATTTCCTTCAATGATGGGATGCAAAAAGGTTCCACAATCATGATCAAGTCTGGTGTTGTTTCACATGATGGGGTAAAAGTT
TATTTCTGCACAAAGAGTGGGTCTTTGCTAGAACTGAGTGAGATTGAGCCTACTAGGTGGGTTAATCATGGAAGCCCCTCGGGTGGAAATGTTGCAGCAA
TTGCTGATGCAGCTACTGTAAGAACAGATGTTCTATACACTGTAAGTTCGACGGGCGATCTTTACGAATACGATAGGATGTCAAAGCCATCATGGAAGAA
GCACATATGGAATGAAGGAGCAGTAGCTGATGCTTCTCTGGCTTCAACAATGGGCTATTCCTTGCATGGAATGGCTGTAGATAACTCCATATCCCTCTTC
CTTTTAACTAAGGCAGGAAAATTGGTGGAGAGGAGGCTGCATCAGAGGAGGTGGAGATGGATAGCACATGCAAGTCCAAAAGATCATCACTTGACATCCA
TTACCCAAATTCAACAGGACCAATCGAATGCCAAGTTCTTCTCGTTGTTCCTCACAACCGCTACTGGATCAGTAATCGAATACCGGATAGCAAAACATTT
CGGCATTACTCGAGAAAACAACAACAATGCTGAAGCATGGTTGAACCATTTACACCCTCAGCATGCAAAAGCTGCAAGAGGAAATGCTGGGATCCAAATT
CAAGTTGGGAGACATCTTTTCCCACTAGATGATGGAAGGCTTGCAGAGCTACACATGCCCCCCGAGACCGAAGGATGGAATCTAGAGTATTGCAGGGAAG
ATAGAGGGCCTACAAATTGCATCATGGGGATAAAAGACGAGCAGAACGATGCAAGAACCGCAACAAGATCGAATATAAGGAGGCGAAAGGACAGCCAAGC
GCAACAAGAGTACTTATCGGCAGGTTCTTCTTCTACTATTGTGAATCCAACAGTAGAAGATAATAGTGTCCCTGACAACTGGATCAACTCTAATTTTCGA
CTGCGGGTGATGCATGGAGGGAGATCATTCTTTCTCGTAACGGAAAATGGATTCACTTTCGAGTATCTATACAACGAAAACGTCTGGATTTGGCTCAGAC
ATGACCATTCGACGCCCATTAAAGGTGCTCTTGGGAACTACAATGGGAGCTTCTTCTTGGTAGACACATATGGGAGCTTGCTTATTAGAGAGAGGAGTGG
GAATGAGTTGGCATGGATCAATTGCACAGCAATGAGGAGAGGTAAACAGGTGACTGGAGGGCCTCCATGGGATTCCATACCAGGAAAACCTATGAGAGCC
ACACCCAAAGACTCGATCTTCTTCGTTAGCAAAAATGGAAGATTGGTTCAGTTCACAGTTGCGCTAAGGAAGTTCAAGTGGAAAGACTGTAGTAGCCCAC
CAAACACCAAAGTAGCCACAATTATAGATCAGGAGCTTTTCAGGCGTAACATAATCTTTGTGACTGGAAAGAATGGGAGGTTATATCAGTACAACAAATC
TCGGCATTTGAGTCTATTGAGACTACCAGGAACAGCGATTAGATCATCATCCCTTGCAGGCTCTCTATTCATGGTGTCGGAGGAAGGTGGACTAGTCGAG
TACCATTGGAACACGGGGGAAGGATGGAACTGGATTGAACACGGGACGCCAAATAAAGGCGTGAGCTTTGCCACGTCTCCAGGCCCATGCTTTGAAAAAC
ACCTTCTGTTTCTGATAGGCACAGATGGGAAGGTTTATATAAGGTACTTGGATGAGATGACGTGGAAGTGGAGGAACTGCGGGTTCCCTTATGTCGGGAA
AGGGAAGGATGGTGATGACGAATCATGCATGGACAAAGATTTCGCAGCAAAGCTGGAGAAGGAAGAGGAAAGCTTACATGAACACAACCAACACTGTGAT
CCAAAGGACAAACAGGTGGCTTCAACCAGGCTGATTCCGTTCTCTGATGATAGTGTGATCTTTGAGCTAAGAGATGGCAGGTTGGCAGAAATGAAAAGAT
CGGAGGGGAGTCGTTGGGTGTGGTCGCGCACGATTGGAACACCTACAAGCTACTGCATCTCAAATTATTGGACGGCTGTAGCATCATGA
AA sequence
>Lus10003631 pacid=23141610 polypeptide=Lus10003631 locus=Lus10003631.g ID=Lus10003631.BGIv1.0 annot-version=v1.0
MSETSIWVTGESGSIYERFWNGVQWVVAPHDLPMSAGHAIGVFIVNRTILALSESGGLYQIQLTEIAQPIWVEISFNDGMQKGSTIMIKSGVVSHDGVKV
YFCTKSGSLLELSEIEPTRWVNHGSPSGGNVAAIADAATVRTDVLYTVSSTGDLYEYDRMSKPSWKKHIWNEGAVADASLASTMGYSLHGMAVDNSISLF
LLTKAGKLVERRLHQRRWRWIAHASPKDHHLTSITQIQQDQSNAKFFSLFLTTATGSVIEYRIAKHFGITRENNNNAEAWLNHLHPQHAKAARGNAGIQI
QVGRHLFPLDDGRLAELHMPPETEGWNLEYCREDRGPTNCIMGIKDEQNDARTATRSNIRRRKDSQAQQEYLSAGSSSTIVNPTVEDNSVPDNWINSNFR
LRVMHGGRSFFLVTENGFTFEYLYNENVWIWLRHDHSTPIKGALGNYNGSFFLVDTYGSLLIRERSGNELAWINCTAMRRGKQVTGGPPWDSIPGKPMRA
TPKDSIFFVSKNGRLVQFTVALRKFKWKDCSSPPNTKVATIIDQELFRRNIIFVTGKNGRLYQYNKSRHLSLLRLPGTAIRSSSLAGSLFMVSEEGGLVE
YHWNTGEGWNWIEHGTPNKGVSFATSPGPCFEKHLLFLIGTDGKVYIRYLDEMTWKWRNCGFPYVGKGKDGDDESCMDKDFAAKLEKEEESLHEHNQHCD
PKDKQVASTRLIPFSDDSVIFELRDGRLAEMKRSEGSRWVWSRTIGTPTSYCISNYWTAVAS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10003631
[exp]
0 1
AT4G10955 alpha/beta-Hydrolases superfam... Lus10001819
[exp]
2.6 0.8596
AT2G26695 Ran BP2/NZF zinc finger-like s... Lus10030054
[exp]
6.3 0.7968
AT4G26110 NAP1;1, ATNAP1;... ARABIDOPSIS THALIANA NUCLEOSOM... Lus10001235
[exp]
9.3 0.7663
Lus10016909
[exp]
12.7 0.8053
AT5G16020 GEX3 gamete-expressed 3 (.1) Lus10034090
[exp]
16.0 0.8112
AT2G46495 RING/U-box superfamily protein... Lus10025546
[exp]
16.3 0.8223
AT2G41790 Insulinase (Peptidase family M... Lus10042064
[exp]
16.6 0.7919
AT5G44510 TAO1 target of AVRB operation1 (.1) Lus10011242
[exp]
17.1 0.7726
AT2G33050 AtRLP26 receptor like protein 26 (.1) Lus10019693
[exp]
20.5 0.7902
AT1G73040 Mannose-binding lectin superfa... Lus10037605
[exp]
20.9 0.8169

Lus10003631 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.