Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51510 260 / 2e-88 Y14 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G11400 52 / 1e-07 ATEIF3G1, EIF3G1 eukaryotic translation initiation factor 3G1 (.1.2) AT5G64200 50 / 7e-07 ATSC35, At-SC35 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) AT1G11650 48 / 2e-06 ATRBP45B RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G54580 47 / 2e-06 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G73530 46 / 5e-06 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G06210 45 / 6e-06 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT1G71800 46 / 1e-05 CSTF64 cleavage stimulating factor 64 (.1) AT1G16610 45 / 2e-05 RNPS1, SR45 arginine/serine-rich 45 (.1.2.3) AT5G06000 45 / 2e-05 ATEIF3G2, EIF3G2 ARABIDOPSIS THALIANA EUKARYOTIC TRANSLATION INITIATION FACTOR 3G2, eukaryotic translation initiation factor 3G2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009963 [exp] 365 / 4e-129 AT1G51510 265 / 3e-90 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10017852 [exp] 54 / 3e-08 AT5G61030 178 / 7e-55 glycine-rich RNA-binding protein 3 (.1) Lus10034685 [exp] 53 / 4e-08 AT5G61030 177 / 7e-54 glycine-rich RNA-binding protein 3 (.1) Lus10021154 [exp] 51 / 2e-07 AT5G61030 188 / 5e-58 glycine-rich RNA-binding protein 3 (.1) Lus10003957 [exp] 51 / 2e-07 AT5G64200 217 / 9e-70 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) Lus10023802 [exp] 51 / 3e-07 AT5G64200 217 / 1e-68 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) Lus10040519 [exp] 51 / 3e-07 AT5G61030 189 / 2e-53 glycine-rich RNA-binding protein 3 (.1) Lus10030482 [exp] 50 / 6e-07 AT3G11400 459 / 9e-165 eukaryotic translation initiation factor 3G1 (.1.2) Lus10017459 [exp] 49 / 1e-06 AT3G11400 447 / 3e-160 eukaryotic translation initiation factor 3G1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G051000 [exp] 308 / 4e-107 AT1G51510 248 / 2e-84 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G255600 [exp] 272 / 6e-93 AT1G51510 230 / 3e-77 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G048300 [exp] 129 / 4e-37 AT1G51510 134 / 1e-39 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.003G023800 [exp] 52 / 9e-08 AT5G64200 207 / 4e-66 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) Potri.012G061600 [exp] 51 / 2e-07 AT5G61030 181 / 9e-56 glycine-rich RNA-binding protein 3 (.1) Potri.010G199000 [exp] 50 / 3e-07 AT3G11400 422 / 4e-150 eukaryotic translation initiation factor 3G1 (.1.2) Potri.011G143100 [exp] 50 / 6e-07 AT1G16610 169 / 3e-48 arginine/serine-rich 45 (.1.2.3) Potri.008G060000 [exp] 50 / 7e-07 AT3G11400 422 / 5e-150 eukaryotic translation initiation factor 3G1 (.1.2) Potri.001G126400 [exp] 50 / 9e-07 AT5G51300 790 / 0.0 splicing factor-related (.1.2.3) Potri.015G057400 [exp] 49 / 1e-06 AT5G61030 157 / 8e-47 glycine-rich RNA-binding protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10003632 pacid=23141612 polypeptide=Lus10003632 locus=Lus10003632.g ID=Lus10003632.BGIv1.0 annot-version=v1.0 ATGGCGAACGTCGAACCAGAGGCGGTGGACTTCGAGCCGGAGGAAGATGATCTGATGGACGAGGAAGGAGCTGTCGACGCCTCCTCCCCACGCGCGCAGC AGCCGAAGCTCAAGTCCGCCATCACCGGCGGAGCATCCACTTCTCTAGCTGCTCCTAAGAAAACCAAAGGCCGTGGGTTTCGCGAGGAAGGTGACGCCGA GCGTCAGAGTCGCCTCACTGGACGGGACTTCGATTCTCTTGGCTCTGAAGTTGGTCCTGGTCCTCAACGATCCATCGAGGGGTGGATTGTTTTGGTTACT GGTGTCCATGAAGAGGCACAAGAGGATCATTTGCAAAATGCTTTTGGCGAGTTCGGGGATATTAAGAATCTGCACTTGAATCTTGACCGTCGTACTGGTT TTGTTAAGGGATATGCGCTAATTGAATATGAGAAATTCGAGGAAGCACAGAATGCTATAGCTTCATTGAACGGAGATCAGATTCTTGAACAGACTGTTAC GGTTGATTGGGCCTTCTGCAATGGTCCCAGTACCGGCTCTCTCAAGAGGAAGAATGCAAGACCCGGAGATCCAGGTCTATTATCTTTCATGTTTTATGGC TGGGATATTTCATGGCTTGTGTATAATCATTTTGTAGGAATGGGCGAACACATCGCTCAAGGAGTCCAAGGAGGCGATATTAGTCGAAGTTCCACAGCTG TGTTCTTCTGGTGTGGTCTGCTGAGGGTTGCTGGTTGTGCTGTCTGTATTTGGTAG
AA sequence Show only first row Show all	>Lus10003632 pacid=23141612 polypeptide=Lus10003632 locus=Lus10003632.g ID=Lus10003632.BGIv1.0 annot-version=v1.0 MANVEPEAVDFEPEEDDLMDEEGAVDASSPRAQQPKLKSAITGGASTSLAAPKKTKGRGFREEGDAERQSRLTGRDFDSLGSEVGPGPQRSIEGWIVLVT GVHEEAQEDHLQNAFGEFGDIKNLHLNLDRRTGFVKGYALIEYEKFEEAQNAIASLNGDQILEQTVTVDWAFCNGPSTGSLKRKNARPGDPGLLSFMFYG WDISWLVYNHFVGMGEHIAQGVQGGDISRSSTAVFFWCGLLRVAGCAVCIW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51510		Y14	RNA-binding (RRM/RBD/RNP motif...		Lus10003632 [exp]	0	1
AT1G03150			Acyl-CoA N-acyltransferases (N...		Lus10022048 [exp]	2.0	0.8354
AT2G47580		U1A	spliceosomal protein U1A (.1)		Lus10003358 [exp]	3.7	0.8560
AT5G14800		EMB2772, AT-P5C...	EMBRYO DEFECTIVE 2772, pyrroli...		Lus10019103 [exp]	5.1	0.7632
AT1G31817		NFD3	NUCLEAR FUSION DEFECTIVE 3, Ri...		Lus10012155 [exp]	5.7	0.8103
AT5G60340			P-loop containing nucleoside t...		Lus10016525 [exp]	7.4	0.8043
AT3G10090			Nucleic acid-binding, OB-fold-...		Lus10029320 [exp]	7.7	0.8172
AT4G30220		RUXF	small nuclear ribonucleoprotei...		Lus10006867 [exp]	8.7	0.8226
AT1G69960		PP2A	serine/threonine protein phosp...		Lus10004252 [exp]	10.6	0.8114
AT3G52570			alpha/beta-Hydrolases superfam...		Lus10016992 [exp]	11.5	0.8252
AT1G26880			Ribosomal protein L34e superfa...		Lus10042199 [exp]	12.5	0.8120

Compare expression of checked genes

Lus10003632 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.