Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58030 365 / 1e-130 Transport protein particle (TRAPP) component (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003350 [exp] 383 / 1e-136 AT5G58030 364 / 2e-129 Transport protein particle (TRAPP) component (.1) Lus10036292 [exp] 310 / 8e-108 AT5G58030 247 / 1e-83 Transport protein particle (TRAPP) component (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G187300 [exp] 372 / 2e-133 AT5G58030 380 / 7e-137 Transport protein particle (TRAPP) component (.1) Potri.018G110000 [exp] 367 / 3e-131 AT5G58030 342 / 1e-121 Transport protein particle (TRAPP) component (.1) Potri.013G031000 [exp] 45 / 7e-06 AT3G05000 312 / 1e-110 Transport protein particle (TRAPP) component (.1) Potri.005G044300 [exp] 42 / 6e-05 AT3G05000 286 / 3e-100 Transport protein particle (TRAPP) component (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0210 [flax] [poplar] HNOX-like PF04051 [flax] [poplar] TRAPP Transport protein particle (TRAPP) component
Representative CDS sequence Show only first row Show all	>Lus10003634 pacid=23141615 polypeptide=Lus10003634 locus=Lus10003634.g ID=Lus10003634.BGIv1.0 annot-version=v1.0 ATGATAGGAGCAAGCAAGATCAAGCAATACTCCAATGTCCTCGACAAACCCCTAAGCAAGGGCAAGCAAGAGGTTAGTCTGAGTGCTTTTGCATTTTTGT TTTCGGAGCTCGTTCAGTACAACCAAACACAGGTTGACAATATTGCTGAGTTAGAACGAAGGTTGGAGGATGCAGGCTACGCTGTTGGAGCTCGAGTTCT TGAACTTCTTTGTCATAGAGAAAAGGGAAATAGACGTGAAACACGACTTCTGGGTATCTTGTCTTTCGTACACAGCACAGTGTGGAAGGTTTTATTTGGG AAAGTGGCTGATTCCTTGGAGAAGGGAACCGAACATGAGGATGAATACATGATCAGCGAGAAAGAACTCCTTGTCAACAGATTCATTTCCATTCCAAAAG ACATGGGAACTTTTAACTGTGGCGCTTTTGTTGCTGGAATTGTGAGGGGTGTGTTGGATGGTGCAGGTTTTCCTGCAGTTGTAACAGCGCATTTTGTTCC TATGGAAGGCCAGCAACGACCTAGGACGACCATTCTGATAAAATTTGCAGAAGAGGTAGCTGGCATTTTCTATTCGCTCAAGATTTTCGGGCCTCTTGGT TGTGAAAACATAAATCATGAAGTCGTACTAAGAAGAGAAGCAAGATTAGTATGA
AA sequence Show only first row Show all	>Lus10003634 pacid=23141615 polypeptide=Lus10003634 locus=Lus10003634.g ID=Lus10003634.BGIv1.0 annot-version=v1.0 MIGASKIKQYSNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHREKGNRRETRLLGILSFVHSTVWKVLFG KVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDGAGFPAVVTAHFVPMEGQQRPRTTILIKFAEEVAGIFYSLKIFGPLG CENINHEVVLRREARLV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58030			Transport protein particle (TR...		Lus10003634 [exp]	0	1
AT4G35410			Clathrin adaptor complex small...		Lus10003641 [exp]	2.4	0.8395
AT5G02280			SNARE-like superfamily protein...		Lus10024390 [exp]	3.0	0.8304
AT5G13710		CPH, SMT1	CEPHALOPOD, sterol methyltrans...		Lus10039600 [exp]	7.5	0.8059
AT5G15290		CASP5	Casparian strip membrane domai...		Lus10015375 [exp]	9.4	0.8393
AT5G13710		CPH, SMT1	CEPHALOPOD, sterol methyltrans...		Lus10029498 [exp]	9.6	0.7773
AT5G42770			Maf-like protein (.1.2)		Lus10002531 [exp]	10.9	0.7861
AT1G20540			Transducin/WD40 repeat-like su...		Lus10021818 [exp]	11.1	0.7534
AT3G57040		ATRR4, ARR9	RESPONSE REGULATOR 4, response...		Lus10039524 [exp]	11.8	0.8228
AT1G51260		LPAT3	lysophosphatidyl acyltransfera...		Lus10027375 [exp]	13.6	0.8143
AT3G62600		ATERDJ3B	DNAJ heat shock family protein...		Lus10032100 [exp]	17.7	0.7151

Compare expression of checked genes

Lus10003634 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.