Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32070 435 / 6e-156 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G80780 433 / 3e-155 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2.3) AT5G10960 395 / 4e-140 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G15920 341 / 9e-119 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2) AT3G44260 281 / 3e-95 AtCAF1a CCR4- associated factor 1a, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT5G22250 276 / 3e-93 AtCAF1b CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G06450 165 / 1e-48 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G61470 136 / 1e-38 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G44240 125 / 7e-35 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G27820 123 / 3e-33 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036291 [exp] 552 / 0 AT2G32070 432 / 9e-155 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10017123 [exp] 427 / 7e-153 AT2G32070 447 / 1e-160 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10018330 [exp] 426 / 2e-152 AT2G32070 444 / 3e-159 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10034180 [exp] 289 / 3e-98 AT5G22250 410 / 4e-146 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10021304 [exp] 273 / 1e-91 AT5G22250 335 / 8e-116 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10004212 [exp] 270 / 2e-90 AT3G44260 336 / 1e-116 CCR4- associated factor 1a, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10016980 [exp] 268 / 1e-88 AT5G22250 332 / 8e-114 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10008043 [exp] 150 / 2e-43 AT1G06450 165 / 5e-48 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10017905 [exp] 148 / 1e-42 AT1G06450 162 / 5e-48 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G046700 [exp] 458 / 5e-165 AT2G32070 472 / 2e-170 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.003G181100 [exp] 452 / 7e-163 AT1G80780 468 / 1e-168 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2.3) Potri.018G020900 [exp] 442 / 7e-159 AT2G32070 441 / 2e-158 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.006G262500 [exp] 442 / 1e-158 AT2G32070 443 / 5e-159 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.006G187200 [exp] 437 / 9e-157 AT2G32070 403 / 2e-143 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.004G200400 [exp] 299 / 4e-102 AT5G22250 419 / 3e-149 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.009G161500 [exp] 296 / 5e-101 AT5G22250 387 / 1e-136 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.016G073000 [exp] 282 / 4e-95 AT3G44260 322 / 5e-111 CCR4- associated factor 1a, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.006G205600 [exp] 280 / 3e-94 AT5G22250 302 / 4e-103 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.001G040400 [exp] 229 / 5e-75 AT5G22250 253 / 4e-84 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF04857 [flax] [poplar] CAF1 CAF1 family ribonuclease
Representative CDS sequence Show only first row Show all	>Lus10003635 pacid=23141611 polypeptide=Lus10003635 locus=Lus10003635.g ID=Lus10003635.BGIv1.0 annot-version=v1.0 ATGTCGATTCTGCCTAAGAGCGAGTCAATAATTATTCGTGACGTGTGGAATGAGAATCTAGAAGATGAATTCAATTTGATTATGGACATAGTTGATGATT TCCCTTTCATTGCAATGGACACAGAGTTCCCTGGAATTATCGTTCGCCCCGTAGGAAATTTCAAGAACGGTACCGACTACAATTACCAAACCCTAAAGGC CAATGTGGATCTTCTAAAGTTGATTCAGCTTGGATTAACTTTTTCAGACGAGAATGGCAACTTGCCAAAATGTGGGACTGGGAAGTACTGTGTCTGGCAG TTCAATTTCCGCGAATTCAACCCGGTTGAGGATTTCTATGCCGATGACTCCATAGAGCTTCTTACACAGAGTGGCATTGATTTCCAGAAGAACACCGAGG TGGGTGTCGATACCAAGAGATTCAGTGAGTTGCTAATGTCGTCGGGGATTGTGTTGAATGACAATGTGCATTGGGTTACTTTCCATAGCGGGTATGATTT TGGCTACCTGTTAAAGCTGCTCACTTGTAAGGACCTTCCTGACACACAATCAGAGTTCTTCAAGTTGATCAGGTTATACTTCCCTGTGCTCTATGATATC AAGCACCTGGTCAAGTTCTGCAATAGTCTTCATGGTGGATTGAACAAGCTAGCGGAGCTGTTGGATGTAGAGAGGATTGGAATCTGTCACCAAGCCGGCT CAGATAGTTTGCTTACATGTTGTACATTCATGAAATTGAAAGAGAGTTTCTTCAATAGTTCGACGGAGAAGTATGTTGGTGTGCTTTATGGCCTTGGTGT TGAGAATGGTCAGAATGCTCATTAA
AA sequence Show only first row Show all	>Lus10003635 pacid=23141611 polypeptide=Lus10003635 locus=Lus10003635.g ID=Lus10003635.BGIv1.0 annot-version=v1.0 MSILPKSESIIIRDVWNENLEDEFNLIMDIVDDFPFIAMDTEFPGIIVRPVGNFKNGTDYNYQTLKANVDLLKLIQLGLTFSDENGNLPKCGTGKYCVWQ FNFREFNPVEDFYADDSIELLTQSGIDFQKNTEVGVDTKRFSELLMSSGIVLNDNVHWVTFHSGYDFGYLLKLLTCKDLPDTQSEFFKLIRLYFPVLYDI KHLVKFCNSLHGGLNKLAELLDVERIGICHQAGSDSLLTCCTFMKLKESFFNSSTEKYVGVLYGLGVENGQNAH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32070			Polynucleotidyl transferase, r...		Lus10003635 [exp]	0	1
AT1G31830			Amino acid permease family pro...		Lus10007593 [exp]	1.0	0.9285
AT5G27930			Protein phosphatase 2C family ...		Lus10029874 [exp]	1.7	0.8960
AT1G47820			unknown protein		Lus10031924 [exp]	2.0	0.8738
AT4G03965			RING/U-box superfamily protein...		Lus10029993 [exp]	2.0	0.9003
AT2G32070			Polynucleotidyl transferase, r...		Lus10036291 [exp]	2.6	0.8680
AT2G43770			Transducin/WD40 repeat-like su...		Lus10002211 [exp]	2.8	0.8505
AT5G56440			F-box/RNI-like/FBD-like domain...		Lus10023425 [exp]	3.5	0.8375
AT5G67220			FMN-linked oxidoreductases sup...		Lus10006260 [exp]	4.5	0.8427
AT3G46790		CRR2	CHLORORESPIRATORY REDUCTION 2,...		Lus10001558 [exp]	6.5	0.8206
AT5G60790		ABCF1, ATGCN1	ARABIDOPSIS THALIANA GENERAL C...		Lus10037947 [exp]	8.0	0.8335

Compare expression of checked genes

Lus10003635 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.