Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010773 [exp] 120 / 6e-34 ND / Lus10007672 [exp] 113 / 5e-31 ND / Lus10015963 [exp] 100 / 2e-26 ND / Lus10021851 [exp] 104 / 4e-26 ND / Lus10036308 [exp] 100 / 2e-24 ND / Lus10017780 [exp] 82 / 2e-19 ND / Lus10018809 [exp] 74 / 3e-16 ND / Lus10014644 [exp] 73 / 3e-16 ND / Lus10022183 [exp] 73 / 4e-15 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003636 pacid=23141613 polypeptide=Lus10003636 locus=Lus10003636.g ID=Lus10003636.BGIv1.0 annot-version=v1.0 ATGGTGATAAAGAGGCCAGCGAAGAAGCGGCAATCAGAGCAAGACAAAGTCAGCCCGAAAAAGAAAAACAATGATGTCGAGGCAAGCAAACAAAATCTGA ACCCCGTCTTGCATTGCAAGATGAAAGGGGTGGTGGACGCCAACGGCGTTTTGAAGATGTTGCATCTGGAAATCCTACGGGAGGGTGGATTGGAGCAGCT AATGCTTAGGAAGTCCGAGGTAGCTGCAAAGGAAGCTGCTTTGGAAGTCGCACTTGCGGCTGGGAAAAAGGAGTTGGAAATTATGACGAGGAGTGAAGTT GAGTCCATAGGTGCTGCGGCTGTCGGAGAAGTTGCGGTAACCAACCTCCTTTGGGAGTGGACCAACCCAGACGTTCCATCCTTTGAGGCCATGACTTCGC CCACACCGACTACGATGCGAATGAAGGTTGCACTCAACAGCTGGGACTATTATAAGGACTACGAGACCAACCCGATCTTCTATGCAACCTTCAAGCGGTT GATGGAGTATGTCGAGCCCTGTTTACGTAGTCTAAACGGAAGCGACATCACAGGGTTTGGTTGGAGAGTATTCGAGGCCCCTCAACAGAGAGCCAACCAG AGTTGTGGAATGATCTCCCTATACTTTATGGAACATTACAACAGCGATTTCACAACGGAACAACGTGGCAATTGCGCTTGGCCAGAAGTCATCACAGCTG ACAGGGCACATTACGCATACCGTCTCATTACCGATCACTACAATAGATGTGGCAGTTACACTGTAGAGAAGGCACTCAAAGCAAACCCCCCTAAGAACTT GAAGAAGGCCAAGCAATGA
AA sequence Show only first row Show all	>Lus10003636 pacid=23141613 polypeptide=Lus10003636 locus=Lus10003636.g ID=Lus10003636.BGIv1.0 annot-version=v1.0 MVIKRPAKKRQSEQDKVSPKKKNNDVEASKQNLNPVLHCKMKGVVDANGVLKMLHLEILREGGLEQLMLRKSEVAAKEAALEVALAAGKKELEIMTRSEV ESIGAAAVGEVAVTNLLWEWTNPDVPSFEAMTSPTPTTMRMKVALNSWDYYKDYETNPIFYATFKRLMEYVEPCLRSLNGSDITGFGWRVFEAPQQRANQ SCGMISLYFMEHYNSDFTTEQRGNCAWPEVITADRAHYAYRLITDHYNRCGSYTVEKALKANPPKNLKKAKQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10003636 [exp]	0	1
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10016224 [exp]	1.0	0.9566
AT3G42640		AHA8	H\(+\)-ATPase 8, H\(+\)-ATPase...		Lus10019064 [exp]	5.7	0.8304
					Lus10033534 [exp]	7.6	0.9134
AT1G73920			alpha/beta-Hydrolases superfam...		Lus10032477 [exp]	8.1	0.8228
					Lus10039990 [exp]	9.3	0.9134
AT2G36620		RPL24A	ribosomal protein L24 (.1)		Lus10014637 [exp]	10.8	0.9134
					Lus10022805 [exp]	12.0	0.9134
					Lus10005608 [exp]	12.4	0.8318
AT5G05530			RING/U-box superfamily protein...		Lus10024629 [exp]	13.2	0.9134
AT2G15220			Plant basic secretory protein ...		Lus10026579 [exp]	14.2	0.9134

Compare expression of checked genes

Lus10003636 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.