Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18900 816 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT3G26480 549 / 0 Transducin family protein / WD-40 repeat family protein (.1) AT5G08390 44 / 0.0004 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 43 / 0.001 Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G18130 42 / 0.001 RACK1C_AT receptor for activated C kinase 1C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036290 [exp] 602 / 0 AT2G18900 439 / 2e-143 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G166500 [exp] 944 / 0 AT2G18900 1030 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.018G091100 [exp] 943 / 0 AT2G18900 1036 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10003637 pacid=23141609 polypeptide=Lus10003637 locus=Lus10003637.g ID=Lus10003637.BGIv1.0 annot-version=v1.0 ATGATCAGAGGCGGAAGAAACTACGTCTCCTCCCCGTCGTCTTTCTCCAACGATGCCAAGCGCCTCCTGGTTTGCGCCGGCAACTCCGTCGCCGTTTTCA GTACCGCCACTGGCTTGCAGGTATCGTCGTTAGATGCGCATACGGCGCCTGTGACGGCGGTAATAGTGGTGCCGGCGTCCAGTCCGGGGAGTAAGATTCT CTGCTTTTGTTGGACGAGTTCGCTCGATGGAACTATCCGGTACTGGGACTTCGCAGCTCCGGAGTTGATTCGGACTGTTGATATCAAGCTCCCTGTTTAC TCAATGGTAATTCCTTCTATGGTTATCCAACAAGCTGTATCAATTGAAAAGAAGGCAAAAGTTTTCGCTTACATTTCAGTAGAAGCTACAAGAGAATCAG ATAACGGTTTATGTGGACAACTCCGAAAATTTAACTTGACTGATTCTCGTATGGTTGGAGGAGCAATATTAGCTGAGATGAAGAAGCCAGAGGTGTTAAC TATTAGTCCCTCCGGAGACCTTTTTGGTGTGCGTAGAAAGCGTAAACTTCAGATATGGAAAGTTCCATCTGCTGATTCTGACCGTACAGTGCTGAAGAAG ATTACCCTGCATCATACAAAGACTATTTCAGCTATTGCATTCCACCCTGCCCAAAGAATTGTTGCTGTAGGAGATGTGTCTGGACGAATTTTGACGTGGA GAGGATTCGGAGATAAAACATTTGCTATGTCTGCTGGGCATGTGAATGGGAGTGCGATGGACACTGATGAAGAAAATCCCGGCGTCAGGGTTAATGATGA CGCTGATACATGCACAACATGGCACTGGCATCCTGATCAAGTGAACTTACTCTCATTCTCTTCTGATGGAGCTTATTTGCTTTCAGGGGGGAAAGAAGGC GTGCTTGTAGTCTGGCAAGTAGACACAGGGAAGAAAAAGTTCTTGCCGCGGATTGGATCCCCACTCTTATATTTGGTGGACTCTCCAGATTCTTCACTTT CGTCAATTTCTTGTGCAGATAATCAGATTCATCTTGTAAAAAGACCGTCGATGGAAATTTTGAAGTCCATCTCTGGCATCAAGCTTCCATGTTCGCATCT GGAGGCATCCATGTGTATGTCAAATGGGATTTCCTTCGATCATAATGCTGGGTTGGCTGCCTTGCGCACTGAGAATTATTCTGTCCAGTTATACAGCCTT TTTGATGATCGTGGAATATCAGAGGTTCAAGTTTATGAGCGAAATCACCAACCAGTTGACGATGTCACGATAATTGTGACATCAGTAGTTCTGTCTCCAG ATAGTTCTATGATGTGTACTTCTGAGGTGAGGCTGCCTGAAGATGGCTTGGGAAACCTTATTTGCCTTAAATTTTTGGACTCGAAGTCAAAGACTGGAGA TTTCAGTCTATCGACCATTGTTTATGAACCACACAGGGACGCCAAAATCTCTGATATTGCATTCAATCCAAAGCATCGTATGGCTGTCAGCACATCCTTT GGAGGAGACTTTAAGGTGTGGAGTTCCAACAGTGGGGTTCCAGGGCAAGAACAAAGTCAGCCAACATCGGGTTGGGTATGCCATTCTGCTGGTTCCTATA AGAAAAAGTCGATGACTGCAGCTGCTTTCTCCCCTGATGGTTCTGTTCTGGCTGTTGCAGCTGAAACGGTGATCACACTGTGGGATCCTGCTAAGAATCT TCTTGTGGCTGTGATAGGAGAAGTTCCCACGCCAATTGCAACCCTCTCATTCATCGGGAACTCGGACCATCTTGTTTCTACATCATTGGGTTCCAAGCCA CAACTCTCTGTTTGGAGTTTGTCAAGTCTATCTTTAAGTTGGTCGTACGGCCTCCACATAGAAGCCATAGCCAGTTCATCAGACACATCCTCGTTTGCTG CTCTCGTCCTCCTTCCACAATCGGTTCGAGCTGATGATTCTAAGGACAAAGCACATAAAAATATTGATGGGCTGTTATTGTTATTCAATTCTGCGGAACC CAATCCTTTAGCCGTGTGGTCAGTGAAGCAGGCAAAATGTGGTGCACTTGCTTTTATCAAGAATCAGTCTTCTGACCAACAGGCTCAAACTCTGCTTGCA TACATGAATGGTGATCACGAGTACGTTCTGTTTAATCCGTATGAGAAAGAAGGTAACGAACCTGGCGTAGCAAAGTGGAAGGGTCATCAAAACAGCCTTG AAGAAGCTGGTAACTTCGGATACGAGTCTCTCTACGGGGAGCTGCCTCCAGAGCCAAAGGCAACTGCTAAACAGATATCATGGATTCCGTCCGCACCTAC TGACGAGAGAGCCTGGGAGAAAATACTCAGCACTTCATCTCACAATCCTCCACACCTTACTAAATTATGTGCGTCGTTTCTGGTATCTCTCTTGGAGAAA AGAAGGAGCGTCCAGGAATGA
AA sequence Show only first row Show all	>Lus10003637 pacid=23141609 polypeptide=Lus10003637 locus=Lus10003637.g ID=Lus10003637.BGIv1.0 annot-version=v1.0 MIRGGRNYVSSPSSFSNDAKRLLVCAGNSVAVFSTATGLQVSSLDAHTAPVTAVIVVPASSPGSKILCFCWTSSLDGTIRYWDFAAPELIRTVDIKLPVY SMVIPSMVIQQAVSIEKKAKVFAYISVEATRESDNGLCGQLRKFNLTDSRMVGGAILAEMKKPEVLTISPSGDLFGVRRKRKLQIWKVPSADSDRTVLKK ITLHHTKTISAIAFHPAQRIVAVGDVSGRILTWRGFGDKTFAMSAGHVNGSAMDTDEENPGVRVNDDADTCTTWHWHPDQVNLLSFSSDGAYLLSGGKEG VLVVWQVDTGKKKFLPRIGSPLLYLVDSPDSSLSSISCADNQIHLVKRPSMEILKSISGIKLPCSHLEASMCMSNGISFDHNAGLAALRTENYSVQLYSL FDDRGISEVQVYERNHQPVDDVTIIVTSVVLSPDSSMMCTSEVRLPEDGLGNLICLKFLDSKSKTGDFSLSTIVYEPHRDAKISDIAFNPKHRMAVSTSF GGDFKVWSSNSGVPGQEQSQPTSGWVCHSAGSYKKKSMTAAAFSPDGSVLAVAAETVITLWDPAKNLLVAVIGEVPTPIATLSFIGNSDHLVSTSLGSKP QLSVWSLSSLSLSWSYGLHIEAIASSSDTSSFAALVLLPQSVRADDSKDKAHKNIDGLLLLFNSAEPNPLAVWSVKQAKCGALAFIKNQSSDQQAQTLLA YMNGDHEYVLFNPYEKEGNEPGVAKWKGHQNSLEEAGNFGYESLYGELPPEPKATAKQISWIPSAPTDERAWEKILSTSSHNPPHLTKLCASFLVSLLEK RRSVQE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18900			Transducin/WD40 repeat-like su...		Lus10003637 [exp]	0	1
AT3G11964			RNA binding;RNA binding (.1)		Lus10016216 [exp]	1.7	0.9644
AT1G63810			unknown protein		Lus10026014 [exp]	2.4	0.9624
AT1G08130		ATLIG1	DNA ligase 1 (.1)		Lus10021418 [exp]	3.3	0.9461
AT1G15440		ATPWP2	\(PERIODIC TRYPTOPHAN PROTEIN ...		Lus10034114 [exp]	3.5	0.9582
AT4G26600			S-adenosyl-L-methionine-depend...		Lus10023095 [exp]	3.9	0.9568
AT5G14520			pescadillo-related (.1)		Lus10000618 [exp]	5.3	0.9580
AT5G40200		DEGP9	DegP protease 9 (.1)		Lus10014524 [exp]	6.8	0.9342
AT1G10490			Domain of unknown function (DU...		Lus10006807 [exp]	7.0	0.9532
AT1G80410		OMA, EMB2753	OMISHA, EMBRYO DEFECTIVE 2753,...		Lus10011474 [exp]	7.9	0.9479
AT5G26860		LON1, LON_ARA_A...	lon protease 1 (.1)		Lus10010919 [exp]	8.0	0.9412

Compare expression of checked genes

Lus10003637 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.